broadinstitute / long-read-pipelines
Long read production pipelines
☆144Updated this week
Alternatives and similar repositories for long-read-pipelines:
Users that are interested in long-read-pipelines are comparing it to the libraries listed below
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆96Updated 10 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Annotation and Ranking of Structural Variation☆247Updated 3 weeks ago
- ☆89Updated 2 months ago
- ☆119Updated 4 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆141Updated last month
- Jasmine: SV Merging Across Samples☆209Updated 3 months ago
- Bayesian genotyper for structural variants☆129Updated 4 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆145Updated last year
- Tools for processing and analyzing structural variants.☆151Updated 2 years ago
- Tools for plotting methylation data in various ways☆144Updated 2 weeks ago
- software tools for haplotype assembly from sequence data☆217Updated last month
- Structural variation and indel detection by local assembly☆244Updated 3 weeks ago
- GATK RNA-Seq Variant Calling in Nextflow☆134Updated 2 years ago
- phasing and Allele Specific Expression from RNA-seq☆112Updated 8 months ago
- A structural variation pipeline for short-read sequencing☆185Updated this week
- Hierarchical Alignment Format☆167Updated 3 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆210Updated last month
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆101Updated 3 months ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆140Updated 4 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆183Updated 10 months ago
- A suite of tools for detecting expansions of short tandem repeats☆80Updated last year
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆144Updated 2 weeks ago
- A tool for somatic structural variant calling using long reads☆118Updated 3 weeks ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- BAM Statistics, Feature Counting and Annotation☆147Updated last month
- Documentation and description of AWS iGenomes S3 resource.☆111Updated 3 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆97Updated last year
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆267Updated last year