broadinstitute / long-read-pipelinesLinks
Long read production pipelines
☆150Updated this week
Alternatives and similar repositories for long-read-pipelines
Users that are interested in long-read-pipelines are comparing it to the libraries listed below
Sorting:
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆164Updated 2 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 4 years ago
- Tools for plotting methylation data in various ways☆165Updated 2 weeks ago
- GATK RNA-Seq Variant Calling in Nextflow☆137Updated 2 years ago
- Detecting contamination in NGS data and multi-species analysis☆79Updated last month
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆109Updated 2 weeks ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆103Updated 2 weeks ago
- ☆123Updated 4 months ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆174Updated last year
- Jasmine: SV Merging Across Samples☆232Updated 11 months ago
- Tools for processing and analyzing structural variants.☆155Updated 3 years ago
- Population-scale genotyping using pangenome graphs☆195Updated 11 months ago
- Bayesian genotyper for structural variants☆136Updated 4 years ago
- software tools for haplotype assembly from sequence data☆224Updated 10 months ago
- Test data to be used for automated testing with the nf-core pipelines☆143Updated this week
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆145Updated 3 months ago
- Annotation and Ranking of Structural Variation☆272Updated 2 months ago
- Match up paired end fastq files quickly and efficiently.☆152Updated last year
- Hierarchical Alignment Format☆173Updated 3 months ago
- BAM Statistics, Feature Counting and Annotation☆151Updated last week
- Variant Calling Pipeline Using GATK4 and Nextflow☆58Updated 2 years ago
- Sequana: a set of Snakemake NGS pipelines☆151Updated 3 weeks ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆143Updated 4 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆173Updated last year
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆251Updated 4 months ago
- Learning the Variant Call Format☆147Updated 4 months ago
- Pipeline to fetch metadata and raw FastQ files from public databases☆183Updated 2 weeks ago
- A structural variation pipeline for short-read sequencing☆196Updated last week