broadinstitute / long-read-pipelinesLinks
Long read production pipelines
☆150Updated this week
Alternatives and similar repositories for long-read-pipelines
Users that are interested in long-read-pipelines are comparing it to the libraries listed below
Sorting:
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆160Updated 2 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆109Updated 2 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 4 years ago
- ☆123Updated 2 months ago
- Jasmine: SV Merging Across Samples☆228Updated 10 months ago
- Detecting contamination in NGS data and multi-species analysis☆79Updated 11 months ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆108Updated 4 months ago
- Tools for plotting methylation data in various ways☆162Updated 2 weeks ago
- software tools for haplotype assembly from sequence data☆223Updated 8 months ago
- Population-scale genotyping using pangenome graphs☆193Updated 9 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆104Updated 4 months ago
- Bayesian genotyper for structural variants☆135Updated 4 years ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆146Updated 3 months ago
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆105Updated 3 years ago
- Hierarchical Alignment Format☆172Updated last month
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆124Updated last year
- Structural variation and indel detection by local assembly☆248Updated last month
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆173Updated last year
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆206Updated 3 weeks ago
- Comparison of multiple long read datasets☆145Updated last month
- VCF-kit: Assorted utilities for the variant call format☆130Updated 3 months ago
- A tool for somatic structural variant calling using long reads☆147Updated last week
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆141Updated 2 months ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆171Updated last year
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆245Updated 3 months ago