Plotting tools for nanopore methylation data
☆95Jul 28, 2025Updated 7 months ago
Alternatives and similar repositories for methplotlib
Users that are interested in methplotlib are comparing it to the libraries listed below
Sorting:
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆203May 4, 2023Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Feb 25, 2021Updated 5 years ago
- Methylation Phasing for Nanopore Sequencing☆49Mar 5, 2023Updated 2 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆161Jan 29, 2026Updated last month
- Set of tools to manipulate and visualize modified base bam files☆59Aug 2, 2022Updated 3 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆118Jun 4, 2023Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆234May 4, 2023Updated 2 years ago
- ☆84Mar 3, 2025Updated 11 months ago
- ☆32Updated this week
- Research release basecalling models and configurations☆117May 21, 2025Updated 9 months ago
- Tools for plotting methylation data in various ways☆174Updated this week
- Structural variation caller using third generation sequencing☆636Dec 18, 2025Updated 2 months ago
- Plotting scripts for long read sequencing data☆532Dec 4, 2025Updated 2 months ago
- 🪡Correct and scaffold assemblies using long reads☆57Sep 4, 2025Updated 5 months ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88Feb 11, 2026Updated 2 weeks ago
- Automatic DNA methylation detection from nanopore tools and their consensus model☆79May 22, 2023Updated 2 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆307Mar 18, 2024Updated last year
- Correcting errors in noisy long reads using variation graphs☆50Nov 17, 2022Updated 3 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated last year
- Variant calling tool for long-read sequencing data☆117Mar 19, 2025Updated 11 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆33Jun 17, 2024Updated last year
- Long read aligner☆114May 26, 2023Updated 2 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆115Oct 25, 2021Updated 4 years ago
- ☆30Feb 5, 2021Updated 5 years ago
- SV detection tool for nanopore sequence reads☆97Jan 7, 2026Updated last month
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- Signal-level algorithms for MinION data☆594Aug 5, 2023Updated 2 years ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Feb 2, 2022Updated 4 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Methylation/modified base calling separated from basecalling.☆182Sep 17, 2024Updated last year
- Sequence correction provided by ONT Research☆500Dec 8, 2025Updated 2 months ago
- k-mer based assembly evaluation☆338Jun 28, 2024Updated last year
- Full-Length Alternative Isoform analysis of RNA☆246Feb 11, 2026Updated 2 weeks ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 5 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Oct 18, 2024Updated last year