Plotting tools for nanopore methylation data
☆95Jul 28, 2025Updated 11 months ago
Alternatives and similar repositories for methplotlib
Users that are interested in methplotlib are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Feb 25, 2021Updated 5 years ago
- Set of tools to manipulate and visualize modified base bam files☆62Aug 2, 2022Updated 3 years ago
- Methylation Phasing for Nanopore Sequencing☆51Mar 5, 2023Updated 3 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆164Mar 19, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆233May 4, 2023Updated 3 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆120Jun 4, 2023Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- Tools for plotting methylation data in various ways☆194Jun 13, 2026Updated 2 weeks ago
- ☆37Mar 31, 2026Updated 3 months ago
- Research release basecalling models and configurations☆117May 20, 2026Updated last month
- ☆85Mar 3, 2025Updated last year
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- ☆30Feb 5, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Correcting errors in noisy long reads using variation graphs☆52Nov 17, 2022Updated 3 years ago
- Methylation/modified base calling separated from basecalling.☆187Sep 17, 2024Updated last year
- 🪡Correct and scaffold assemblies using long reads☆58Apr 1, 2026Updated 2 months ago
- Signal-level algorithms for MinION data☆597Aug 5, 2023Updated 2 years ago
- Automatic DNA methylation detection from nanopore tools and their consensus model☆79May 22, 2023Updated 3 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆35Mar 4, 2026Updated 3 months ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated 2 years ago
- Plotting scripts for long read sequencing data☆556Jun 15, 2026Updated 2 weeks ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Oct 25, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Structural variation caller using third generation sequencing☆663Updated this week
- Variant calling tool for long-read sequencing data☆119Mar 19, 2025Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆92Feb 2, 2022Updated 4 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88Jun 20, 2026Updated last week
- SV detection tool for nanopore sequence reads☆97Mar 25, 2026Updated 3 months ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- Long read aligner☆114May 26, 2023Updated 3 years ago
- Sequence correction provided by ONT Research☆516May 20, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆285Oct 18, 2024Updated last year
- A bioinformatics tool for working with modified bases☆269Jun 12, 2026Updated 2 weeks ago
- ☆29Oct 17, 2023Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆48Mar 25, 2026Updated 3 months ago
- Direct RNA publication scripts☆11Sep 20, 2017Updated 8 years ago
- Extract modifed base call information from Guppy Fast5 files.☆14Mar 28, 2022Updated 4 years ago
- Enabling differential allele-specific analysis☆11Dec 28, 2024Updated last year