Plotting tools for nanopore methylation data
☆95Jul 28, 2025Updated 9 months ago
Alternatives and similar repositories for methplotlib
Users that are interested in methplotlib are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 3 years ago
- Set of tools to manipulate and visualize modified base bam files☆61Aug 2, 2022Updated 3 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Feb 25, 2021Updated 5 years ago
- Methylation Phasing for Nanopore Sequencing☆50Mar 5, 2023Updated 3 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆164Mar 19, 2026Updated 2 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆233May 4, 2023Updated 3 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆118Jun 4, 2023Updated 2 years ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- Tools for plotting methylation data in various ways☆190May 7, 2026Updated last week
- ☆36Mar 31, 2026Updated last month
- Research release basecalling models and configurations☆117May 21, 2025Updated 11 months ago
- ☆84Mar 3, 2025Updated last year
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- ☆30Feb 5, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Correcting errors in noisy long reads using variation graphs☆52Nov 17, 2022Updated 3 years ago
- Methylation/modified base calling separated from basecalling.☆187Sep 17, 2024Updated last year
- 🪡Correct and scaffold assemblies using long reads☆57Apr 1, 2026Updated last month
- Signal-level algorithms for MinION data☆596Aug 5, 2023Updated 2 years ago
- Automatic DNA methylation detection from nanopore tools and their consensus model☆79May 22, 2023Updated 2 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆34Mar 4, 2026Updated 2 months ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated 2 years ago
- Plotting scripts for long read sequencing data☆550Mar 17, 2026Updated 2 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆115Oct 25, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Structural variation caller using third generation sequencing☆652May 7, 2026Updated last week
- Variant calling tool for long-read sequencing data☆117Mar 19, 2025Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Feb 2, 2022Updated 4 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆309Mar 18, 2024Updated 2 years ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88May 11, 2026Updated last week
- SV detection tool for nanopore sequence reads☆97Mar 25, 2026Updated last month
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- Long read aligner☆114May 26, 2023Updated 2 years ago
- Sequence correction provided by ONT Research☆513Apr 8, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆285Oct 18, 2024Updated last year
- A bioinformatics tool for working with modified bases☆265Apr 29, 2026Updated 3 weeks ago
- ☆29Oct 17, 2023Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆48Mar 25, 2026Updated last month
- Direct RNA publication scripts☆11Sep 20, 2017Updated 8 years ago
- Extract modifed base call information from Guppy Fast5 files.☆14Mar 28, 2022Updated 4 years ago
- Enabling differential allele-specific analysis☆11Dec 28, 2024Updated last year