PEPPER-Margin-DeepVariant
☆258Jan 12, 2024Updated 2 years ago
Alternatives and similar repositories for pepper
Users that are interested in pepper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆33Nov 6, 2022Updated 3 years ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆369Jun 9, 2026Updated last week
- Long read aligner☆114May 26, 2023Updated 3 years ago
- Long read / genome alignment software☆322Dec 16, 2025Updated 6 months ago
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- diploid SNV caller for error-prone reads☆211Apr 26, 2024Updated 2 years ago
- Structural variation caller using third generation sequencing☆660May 18, 2026Updated 3 weeks ago
- Structural variant toolkit for VCFs☆414May 22, 2026Updated 3 weeks ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- Plot structural variant signals from many BAMs and CRAMs☆567Jul 13, 2024Updated last year
- Sequence correction provided by ONT Research☆517May 20, 2026Updated 3 weeks ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆166Feb 26, 2025Updated last year
- Long read based human genomic structural variation detection with cuteSV☆289Mar 26, 2026Updated 2 months ago
- ☆78Jun 12, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Toolset for SV simulation, comparison and filtering☆420Dec 1, 2023Updated 2 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆109Jun 6, 2021Updated 5 years ago
- Read-based phasing of genomic variants, also called haplotype assembly☆418Dec 31, 2025Updated 5 months ago
- MarginPolish: Graph based assembly polishing☆47Nov 24, 2020Updated 5 years ago
- Variant calling tool for long-read sequencing data☆118Mar 19, 2025Updated last year
- Structural Variant Identification Method using Long Reads☆182Jun 29, 2021Updated 4 years ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆432Feb 20, 2026Updated 3 months ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆185Apr 12, 2024Updated 2 years ago
- Nanopore raw signal repeat detection pipeline☆45Mar 17, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Very fast ONT basecaller☆52Jun 17, 2022Updated 3 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆241Dec 29, 2023Updated 2 years ago
- ☆129May 4, 2026Updated last month
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆68Dec 2, 2022Updated 3 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆205May 4, 2023Updated 3 years ago
- ☆121Updated this week
- software tools for haplotype assembly from sequence data☆233Feb 9, 2025Updated last year
- k-mer based assembly evaluation☆343May 21, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling☆106Sep 1, 2022Updated 3 years ago
- High-quality Nanopore-only genome polisher☆71Aug 16, 2024Updated last year
- DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) …☆266Apr 7, 2026Updated 2 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,197May 19, 2026Updated 3 weeks ago
- CLI tool for flexible and fast adaptive sampling on ONT sequencers☆197Feb 25, 2026Updated 3 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- Research release basecalling models and configurations☆117May 20, 2026Updated 3 weeks ago