Alternatives and similar repositories for longshot

Users that are interested in longshot are comparing it to the libraries listed below

• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆160Updated 8 months ago
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆225Updated 2 months ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆164Updated last week
• marbl / Winnowmap
  Long read / genome alignment software
  ☆305Updated last year
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆231Updated 11 months ago
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆239Updated last year
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆205Updated this week
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆162Updated 2 years ago
• vibansal / HapCUT2
  software tools for haplotype assembly from sequence data
  ☆224Updated 9 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆176Updated last year
• wdecoster / chopper
  ☆219Updated 2 weeks ago
• cgroza / GraffiTE
  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …
  ☆209Updated last week
• eldariont / svim
  Structural Variant Identification Method using Long Reads
  ☆178Updated 4 years ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆283Updated last year
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆142Updated 3 months ago
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆208Updated 2 years ago
• epi2me-labs / wf-human-variation
  ☆139Updated 3 weeks ago
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆214Updated last month
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆205Updated 3 years ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 4 years ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆161Updated 3 years ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆173Updated 4 years ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆150Updated last month
• bcgsc / straglr
  Tandem repeat expansion detection or genotyping from long-read alignments
  ☆130Updated 2 months ago
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆272Updated 2 years ago
• lbcb-sci / racon
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
  ☆230Updated last year
• HKU-BAL / Clair3
  Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
  ☆314Updated last month
• KamilSJaron / smudgeplot
  Inference of ploidy and heterozygosity structure using whole genome sequencing data
  ☆281Updated this week
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆135Updated 4 years ago
• marbl / merqury
  k-mer based assembly evaluation
  ☆332Updated last year