diploid SNV caller for error-prone reads
☆212Apr 26, 2024Updated 2 years ago
Alternatives and similar repositories for longshot
Users that are interested in longshot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural variation caller using third generation sequencing☆684Sep 10, 2026Updated last month
- Long read based human genomic structural variation detection with cuteSV☆295Sep 24, 2026Updated 2 weeks ago
- PEPPER-Margin-DeepVariant☆261Jan 12, 2024Updated 2 years ago
- Long read / genome alignment software☆331Dec 16, 2025Updated 9 months ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆133Updated this week
- Variant calling tool for long-read sequencing data☆119Mar 19, 2025Updated last year
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆393Updated this week
- Read-based phasing of genomic variants, also called haplotype assembly☆430Sep 24, 2026Updated 2 weeks ago
- Structural Variant Identification Method using Long Reads☆188Jun 29, 2021Updated 5 years ago
- Long read aligner☆115May 26, 2023Updated 3 years ago
- ☆291Dec 29, 2025Updated 9 months ago
- Plot structural variant signals from many BAMs and CRAMs☆574Jul 13, 2024Updated 2 years ago
- haplotypic duplication identification tool☆296Oct 30, 2025Updated 11 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Structural variant toolkit for VCFs☆424Oct 3, 2026Updated last week
- Jasmine: SV Merging Across Samples☆261Dec 20, 2024Updated last year
- Tumour-only somatic mutation calling using long reads☆29Oct 28, 2024Updated last year
- software tools for haplotype assembly from sequence data☆233Feb 9, 2025Updated last year
- Structural variant caller for low-depth long-read sequencing data☆50Feb 5, 2026Updated 8 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆225Sep 28, 2026Updated last week
- SV detection tool for nanopore sequence reads☆99Mar 25, 2026Updated 6 months ago
- ☆52Jun 25, 2024Updated 2 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆168Jul 15, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆529May 20, 2026Updated 4 months ago
- Annotation and Ranking of Structural Variation☆310Aug 11, 2026Updated 2 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆190Oct 1, 2026Updated last week
- Yet Another Chimeric Read Detector☆88Nov 7, 2024Updated last year
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆67Feb 23, 2020Updated 6 years ago
- Structural variant (SV) analysis tools☆42Jul 1, 2024Updated 2 years ago
- bioinformatics toolkit in rust☆109Aug 16, 2026Updated last month
- An accurate GFF3/GTF lift over pipeline☆559Aug 1, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A genomic k-mer counter (and sequence utility) with nice features.☆191Jul 21, 2026Updated 2 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆23Aug 1, 2024Updated 2 years ago
- Toolset for SV simulation, comparison and filtering☆426Dec 1, 2023Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆56Mar 5, 2025Updated last year
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆878May 2, 2026Updated 5 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆421Aug 25, 2026Updated last month
- Phased assembly variant caller☆147Dec 4, 2024Updated last year