epi2me-labs / pychopper
cDNA read preprocessing
☆69Updated 9 months ago
Alternatives and similar repositories for pychopper
Users that are interested in pychopper are comparing it to the libraries listed below
Sorting:
- Tools for plotting methylation data in various ways☆147Updated this week
- A tool for somatic structural variant calling using long reads☆130Updated 2 weeks ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆60Updated last month
- SV detection tool for nanopore sequence reads☆91Updated last month
- ☆91Updated last week
- Tandem repeat expansion detection or genotyping from long-read alignments☆107Updated this week
- GenMap - Fast and Exact Computation of Genome Mappability☆107Updated 10 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆99Updated last year
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Application of pan-genome for population☆104Updated 7 months ago
- SV caller for nanopore data☆91Updated 4 years ago
- Research release basecalling models and configurations☆110Updated 11 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆115Updated last month
- Toolkit for calling structural variants using short or long reads☆102Updated this week
- Evaluating genome assemblies☆89Updated 2 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆100Updated 7 months ago
- Variant calling tool for long-read sequencing data☆109Updated last month
- Structural Variant Identification Method using Genome Assemblies☆115Updated 2 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆89Updated 9 months ago
- Comparison of multiple long read datasets☆130Updated this week
- ☆61Updated last year
- source code for EVM☆110Updated 5 months ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆141Updated 6 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last week
- ☆48Updated 8 months ago
- Pangenome-based genome inference☆127Updated last month
- Evaluation and polishing workflows for T2T genome assemblies☆129Updated 7 months ago
- Software for Quantifying Interspersed Repeat Expression☆55Updated 2 years ago