eldariont / svimLinks
Structural Variant Identification Method using Long Reads
☆177Updated 4 years ago
Alternatives and similar repositories for svim
Users that are interested in svim are comparing it to the libraries listed below
Sorting:
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆127Updated 3 months ago
- Pangenome-based genome inference☆149Updated 3 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- Jasmine: SV Merging Across Samples☆228Updated 10 months ago
- Collection of tools for the analysis of CpG data☆96Updated 3 months ago
- Research release basecalling models and configurations☆115Updated 5 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆173Updated last year
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 4 years ago
- accurate LiftOver tool for new genome assemblies☆137Updated last year
- Tools for plotting methylation data in various ways☆162Updated 2 weeks ago
- Phased assembly variant caller☆126Updated 10 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆189Updated 5 months ago
- Yet another k-mer analyzer☆149Updated 3 weeks ago
- Structural Variant Identification Method using Genome Assemblies☆124Updated 3 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆153Updated 3 months ago
- Constructing a pangenome gene graph☆196Updated 2 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆146Updated 3 months ago
- Reference-free profiling of polyploid genomes☆129Updated 3 weeks ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆204Updated 2 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆238Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆119Updated 3 weeks ago
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago
- A tool for somatic structural variant calling using long reads☆147Updated last week
- ☆168Updated 2 weeks ago
- Nanopore data assembler☆161Updated 3 years ago
- A list of software for pangenomics☆134Updated last week
- Yet another Hi-C scaffolding tool☆163Updated 11 months ago