eldariont / svim

Related projects ⓘ

Alternatives and complementary repositories for svim

• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆181Updated 2 years ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆114Updated last week
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆106Updated this week
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• wdecoster / chopper
  ☆152Updated 2 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆174Updated 4 months ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆74Updated 9 months ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆171Updated 3 years ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆130Updated 3 weeks ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 4 years ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆128Updated last week
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆192Updated 10 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆108Updated 2 months ago
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆150Updated last month
• epi2me-labs / wf-transcriptomes
  ☆76Updated last week
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆136Updated 2 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆103Updated 5 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆93Updated 10 months ago
• epi2me-labs / wf-human-variation
  ☆105Updated this week
• EichlerLab / pav
  Phased assembly variant caller
  ☆98Updated last month
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆92Updated 6 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆96Updated last year
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆105Updated 2 weeks ago
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆209Updated 11 months ago
• c-zhou / yahs
  Yet another Hi-C scaffolding tool
  ☆131Updated 2 weeks ago
• marbl / ModDotPlot
  ☆121Updated last month
• nanoporetech / pomoxis
  Analysis components from Oxford Nanopore Research
  ☆93Updated 2 months ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆110Updated 2 months ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆178Updated last month
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆90Updated last month