Alternatives and similar repositories for svim

Users that are interested in svim are comparing it to the libraries listed below

• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆159Updated 7 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆147Updated 2 months ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆187Updated last year
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 4 years ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆227Updated 9 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆125Updated 2 months ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆95Updated 3 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆188Updated 4 months ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆135Updated last year
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆171Updated last year
• EichlerLab / pav
  Phased assembly variant caller
  ☆126Updated 10 months ago
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆124Updated 3 years ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆146Updated last week
• lh3 / yak
  Yet another k-mer analyzer
  ☆143Updated last year
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆161Updated 3 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆114Updated 4 months ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆145Updated 2 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆195Updated last month
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆237Updated last year
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆133Updated 4 years ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆209Updated last year
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆92Updated 5 years ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆152Updated 3 months ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆160Updated last week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 5 months ago
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆204Updated 2 years ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆126Updated 3 months ago
• twolinin / longphase
  ☆117Updated last month
• arangrhie / T2T-Polish
  Evaluation and polishing workflows for T2T genome assemblies
  ☆137Updated 3 months ago