vahidAK / NanoMethPhase
Methylation Phasing for Nanopore Sequencing
☆48Updated 2 years ago
Alternatives and similar repositories for NanoMethPhase:
Users that are interested in NanoMethPhase are comparing it to the libraries listed below
- Set of tools to manipulate and visualize modified base bam files☆54Updated 2 years ago
- ☆46Updated 8 months ago
- Error correction of ONT transcript reads☆58Updated last year
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆40Updated this week
- SRF: Satellite Repeat Finder☆95Updated last year
- WDL workflows for variant calling and assembly using ONT☆33Updated this week
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 6 months ago
- Toolkit for calling structural variants using short or long reads☆103Updated 2 weeks ago
- Somatic structural variant caller for long-read data☆65Updated last week
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 4 months ago
- Collection of tools for the analysis of CpG data☆81Updated 3 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆41Updated 6 months ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last week
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- PacBio BAM toolkit☆43Updated 2 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated last month
- Simple pileup-based variant caller☆89Updated last week
- Structural variant caller for real-time long-read sequencing data☆56Updated 2 years ago
- Mapping pipeline for data generated using Arima-HiC☆76Updated 11 months ago
- ☆61Updated last month
- ☆39Updated 3 weeks ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- ☆39Updated 2 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection)☆30Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 6 months ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 3 months ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated last year