VGP / vgp-assemblyLinks
VGP repository for the genome assembly working group
☆193Updated last month
Alternatives and similar repositories for vgp-assembly
Users that are interested in vgp-assembly are comparing it to the libraries listed below
Sorting:
- haplotypic duplication identification tool☆249Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- Nanopore data assembler☆157Updated 3 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆281Updated 8 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆214Updated 10 months ago
- k-mer based assembly evaluation☆315Updated last year
- Fast and accurately polish the genome generated by long reads.☆227Updated 6 months ago
- De-Novo Repeat Discovery Tool☆216Updated 2 weeks ago
- A tool to circularize genome assemblies☆243Updated last year
- Jasmine: SV Merging Across Samples☆217Updated 6 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆233Updated 11 months ago
- Long read / genome alignment software☆290Updated 8 months ago
- Filtering and trimming of long read sequencing data☆207Updated 2 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆170Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆206Updated 3 weeks ago
- A genome completeness evaluation tool based on miniprot☆215Updated 2 months ago
- Fast genome analysis from unassembled short reads☆292Updated last year
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆189Updated last year
- base-accurate DNA sequence alignments using WFA and mashmap3☆193Updated last week
- ☆200Updated 2 months ago
- Long read based human genomic structural variation detection with cuteSV☆267Updated last month
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- Program for aligning DNA sequences, a pairwise aligner.☆225Updated last month
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆141Updated this week
- Genome Assembly and Annotation Service code☆213Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆225Updated last year
- software tools for haplotype assembly from sequence data☆219Updated 5 months ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆154Updated 3 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated 8 months ago