Alternatives and similar repositories for vgp-assembly:

Users that are interested in vgp-assembly are comparing it to the libraries listed below

• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆238Updated last year
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆181Updated 2 months ago
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆205Updated 2 years ago
• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆202Updated last month
• marbl / merqury
  k-mer based assembly evaluation
  ☆309Updated 10 months ago
• BGI-Qingdao / TGS-GapCloser
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆205Updated 8 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆161Updated last year
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆211Updated 4 months ago
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆203Updated 2 years ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆151Updated 3 years ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆173Updated 3 years ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆222Updated 3 months ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆277Updated 6 months ago
• schatzlab / genomescope
  Fast genome analysis from unassembled short reads
  ☆289Updated last year
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆209Updated last week
• Gabaldonlab / redundans
  Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
  ☆145Updated 3 weeks ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆149Updated 2 years ago
• marbl / Winnowmap
  Long read / genome alignment software
  ☆285Updated 6 months ago
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆135Updated 4 years ago
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆225Updated 8 months ago
• ndierckx / NOVOPlasty
  NOVOPlasty - The organelle assembler and heteroplasmy caller
  ☆187Updated last year
• tangerzhang / ALLHiC
  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
  ☆176Updated 6 months ago
• PASApipeline / PASApipeline
  PASA software
  ☆188Updated 2 months ago
• KamilSJaron / smudgeplot
  Inference of ploidy and heterozygosity structure using whole genome sequencing data
  ☆266Updated 2 months ago
• aaranyue / quarTeT
  A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification
  ☆130Updated last month
• Dfam-consortium / RepeatModeler
  De-Novo Repeat Discovery Tool
  ☆209Updated this week
• waveygang / wfmash
  base-accurate DNA sequence alignments using WFA and mashmap3
  ☆186Updated this week
• wdecoster / chopper
  ☆185Updated last week
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆241Updated last year
• tjiangHIT / cuteSV
  Long read based human genomic structural variation detection with cuteSV
  ☆260Updated 3 weeks ago