Alternatives and similar repositories for vgp-assembly

Users that are interested in vgp-assembly are comparing it to the libraries listed below

• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆244Updated last year
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆225Updated 4 months ago
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆204Updated 2 years ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆173Updated 4 years ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆182Updated 3 weeks ago
• marbl / merqury
  k-mer based assembly evaluation
  ☆312Updated 11 months ago
• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆204Updated 2 months ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆242Updated last year
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆156Updated 3 years ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆185Updated last year
• marbl / Winnowmap
  Long read / genome alignment software
  ☆288Updated 7 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆164Updated last year
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆213Updated last month
• BGI-Qingdao / TGS-GapCloser
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆214Updated 9 months ago
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆205Updated 2 years ago
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆141Updated 7 months ago
• tangerzhang / ALLHiC
  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
  ☆177Updated 7 months ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆278Updated 7 months ago
• schatzlab / genomescope
  Fast genome analysis from unassembled short reads
  ☆289Updated last year
• Dfam-consortium / RepeatModeler
  De-Novo Repeat Discovery Tool
  ☆214Updated last month
• wdecoster / chopper
  ☆194Updated last month
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆135Updated 4 years ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆202Updated last year
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆215Updated 5 months ago
• Gabaldonlab / redundans
  Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
  ☆151Updated last month
• PASApipeline / PASApipeline
  PASA software
  ☆188Updated 3 months ago
• baoxingsong / AnchorWave
  Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
  ☆171Updated last month
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆202Updated 9 months ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆214Updated last month
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆96Updated 3 months ago