tangerzhang / ALLHiC
ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
☆175Updated 5 months ago
Alternatives and similar repositories for ALLHiC:
Users that are interested in ALLHiC are comparing it to the libraries listed below
- Generate an interactive dot plot from mummer or minimap alignments☆197Updated last year
- Fast and accurately polish the genome generated by long reads.☆219Updated 2 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆197Updated 3 weeks ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆183Updated 10 months ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆135Updated 2 months ago
- Any Way to Show Multi genomic Synteny☆177Updated 5 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆170Updated 2 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆176Updated 2 weeks ago
- Ultra-fast de novo assembler using long noisy reads☆134Updated 4 years ago
- Nanopore data assembler☆146Updated 2 years ago
- Version 5 of the CAFE phylogenetics software☆129Updated last month
- Yet another Hi-C scaffolding tool☆142Updated 4 months ago
- An ultra-fast and efficient genomic tool for coverage calculation☆142Updated 6 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆92Updated last month
- PASA software☆184Updated last month
- ☆178Updated last month
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆159Updated last year
- A pipeline used to identify different modes of duplicated gene pairs☆97Updated last week
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆185Updated last year
- ☆76Updated 8 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆125Updated this week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆208Updated 3 weeks ago
- haplotypic duplication identification tool☆228Updated last year
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆96Updated last year
- A genome completeness evaluation tool based on miniprot☆195Updated last week
- A gap-closing software tool that uses long reads to enhance genome assembly.☆202Updated 6 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆144Updated last year
- De-Novo Repeat Discovery Tool☆207Updated 2 months ago