gf777 / mitoVGPLinks
The Vertebrate Genomes Project Mitogenome Assembly Pipeline
☆19Updated 2 years ago
Alternatives and similar repositories for mitoVGP
Users that are interested in mitoVGP are comparing it to the libraries listed below
Sorting:
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Consensus genome annotation using OMA☆31Updated 3 weeks ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated last year
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 10 months ago
- A comparative genome scaffolding tool☆16Updated 7 years ago
- ☆20Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Updated 5 years ago
- This is the Haplotypo repository☆22Updated last year
- A reliable gap filling pipeline for draft genomes☆11Updated 6 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 11 months ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Set of script for the paper on the cattle graph genome☆13Updated 3 years ago
- ☆16Updated 4 years ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- ☆16Updated 8 years ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆19Updated 6 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated 5 months ago
- ☆27Updated 5 months ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Updated 7 years ago
- Infering ancestral synteny with hierarchical orthologous groups☆38Updated 3 months ago
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆22Updated 4 years ago
- Long read QC, assembly and scaffolding pipeline☆13Updated 5 years ago
- ☆17Updated 3 weeks ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Updated 3 months ago