☆13Nov 15, 2017Updated 8 years ago
Alternatives and similar repositories for local-rearrangements
Users that are interested in local-rearrangements are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reference-agnostic Representation and Visualization of Pan-genomes☆18Sep 16, 2021Updated 4 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated last year
- Strand and WGD aware syntenic gene identification☆16Oct 16, 2025Updated 9 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- A tool for recovering synteny blocks from multiple alignment☆33Oct 18, 2021Updated 4 years ago
- ☆13Jan 20, 2026Updated 6 months ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated last year
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Dot: An interactive dot plot viewer for comparative genomics☆37Jun 22, 2026Updated last month
- ☆17Jan 15, 2025Updated last year
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 6 years ago
- ☆15Aug 6, 2018Updated 7 years ago
- Genome-Genome circle synteny☆25Dec 1, 2023Updated 2 years ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆23Dec 6, 2018Updated 7 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 10 months ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆11Dec 7, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 2 months ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- Find and visualize rearrangements in DNA sequences☆55Jun 3, 2026Updated last month
- Tools to gather evidence for structural variation via breakpoint detection.☆21Mar 27, 2026Updated 3 months ago
- Assemble and following pipeline used in wisent genome paper.☆17Dec 23, 2016Updated 9 years ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- assembly evaluation tool☆35May 11, 2022Updated 4 years ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- ☆41Jun 8, 2023Updated 3 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Mar 21, 2024Updated 2 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year