mcfrith / local-rearrangementsLinks
☆13Updated 8 years ago
Alternatives and similar repositories for local-rearrangements
Users that are interested in local-rearrangements are comparing it to the libraries listed below
Sorting:
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Updated last year
- Everything but the kitchen sink☆11Updated 11 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Updated 7 months ago
- defusion☆14Updated 4 years ago
- base-level dotplots from PAF alignments☆28Updated 3 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated 2 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆12Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 5 months ago
- ☆23Updated 4 months ago
- ☆15Updated 2 years ago
- ☆13Updated 7 months ago
- Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated 5 months ago
- Set of script for the paper on the cattle graph genome☆13Updated 3 years ago
- Benchmarking variant calling in polyploids☆15Updated 4 years ago
- Genome Assembly 102☆17Updated 8 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Updated 4 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last month
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Updated last year
- Iterative error correction of long reads☆13Updated 3 years ago
- Non-parametric structural variant genotyper☆15Updated 4 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago
- ☆10Updated 5 years ago
- Prefix-renaming FASTA records really fast.☆17Updated last year
- Phasing reads with secondary alignments☆21Updated last year
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- ☆12Updated 4 months ago
- ☆12Updated last year
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated 2 years ago