☆13Nov 15, 2017Updated 8 years ago
Alternatives and similar repositories for local-rearrangements
Users that are interested in local-rearrangements are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- Convergence analysis using relative rate and correcting for phylogenetic relatedness☆12Apr 25, 2025Updated last year
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated last month
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Reference-agnostic Representation and Visualization of Pan-genomes☆19Sep 16, 2021Updated 5 years ago
- Genome-Genome circle synteny☆25Oct 9, 2026Updated 3 weeks ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 5 years ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Process, visualize, and analyze phylogenetic trees☆13Oct 27, 2026Updated last week
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Aug 4, 2026Updated 3 months ago
- ☆18Jan 29, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Visualising discordant reads☆16Sep 2, 2015Updated 11 years ago
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated 2 years ago
- A package to count reads mapping on transposable elements subfamilies, families and classes.☆13Feb 3, 2023Updated 3 years ago
- ☆10Nov 20, 2025Updated 11 months ago
- ☆11Nov 18, 2021Updated 4 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- Find and visualize rearrangements in DNA sequences☆56Jun 3, 2026Updated 5 months ago
- ☆43Jun 8, 2023Updated 3 years ago
- Pangenome diversity from k-mers or genes☆13Sep 22, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Strand and WGD aware syntenic gene identification☆16Oct 16, 2025Updated last year
- Command line tools for IntSpan related bioinformatics operations☆12Apr 9, 2025Updated last year
- blastn2dotplots: multiple dot-plot visualizer☆29Sep 15, 2025Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆27Aug 20, 2020Updated 6 years ago
- R package to draw syntenic plots in 3 different styles☆47Feb 2, 2026Updated 9 months ago
- Transposable Element Repeat Result classifIER☆14Oct 28, 2026Updated last week
- Workflow to visualize pggb graphs in jbrowse☆11Mar 15, 2024Updated 2 years ago
- repository for materials to do with the VGP phase 1 data freeze, analyses, and publication☆11Dec 23, 2025Updated 10 months ago
- A context-based long-read simulator☆16Oct 12, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆26Nov 21, 2023Updated 2 years ago
- ☆34Aug 1, 2023Updated 3 years ago
- a programme for visualization of short sequence alignment and path navigation in graphical pan-genome☆26Jan 23, 2024Updated 2 years ago
- NeSSie library and tool for the analysis of elements of sequence symmetry in nucleic-acids☆13Jun 26, 2018Updated 8 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2026Updated last month
- Tools for improving the sensitivity and specificity of genome alignments☆58Mar 12, 2026Updated 7 months ago
- ☆19Nov 9, 2020Updated 5 years ago