mcfrith / local-rearrangementsLinks
☆12Updated 7 years ago
Alternatives and similar repositories for local-rearrangements
Users that are interested in local-rearrangements are comparing it to the libraries listed below
Sorting:
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Updated last year
- Everything but the kitchen sink☆11Updated 6 months ago
- Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.☆10Updated last week
- base-level dotplots from PAF alignments☆26Updated 2 weeks ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆9Updated 2 years ago
- a precise pangenome browser combining linear and graph-based pan-genome☆11Updated last year
- Efficient indexing and querying of annotations in a pangenome graph☆10Updated last month
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 3 weeks ago
- ☆11Updated 2 months ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Updated 4 years ago
- defusion☆14Updated 3 years ago
- ☆14Updated last year
- parallelLastz: Running Lastz in parallel☆15Updated 10 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 6 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Phasing reads with secondary alignments☆19Updated 8 months ago
- Prefix-renaming FASTA records really fast.☆17Updated last year
- ☆10Updated 5 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆12Updated this week
- ☆21Updated last month
- Genome Assembly 102☆15Updated 3 months ago
- Iterative error correction of long reads☆13Updated 2 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- Benchmarking variant calling in polyploids☆15Updated 3 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆16Updated last week
- ☆16Updated last month
- ☆10Updated 5 years ago