phasegenomics / FALCON-PhaseLinks
FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
☆74Updated 4 years ago
Alternatives and similar repositories for FALCON-Phase
Users that are interested in FALCON-Phase are comparing it to the libraries listed below
Sorting:
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 9 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- Specifications for PacBio® native file formats☆31Updated 10 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- Structural Variant Index☆75Updated 9 months ago
- ☆46Updated 5 years ago
- ☆81Updated 7 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Plotting tools for nanopore methylation data☆93Updated 2 months ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆104Updated last month
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Toolkit for calling structural variants using short or long reads☆109Updated last week
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- ☆78Updated 5 years ago
- An accurate and ultra-fast hybrid genome assembler☆85Updated last year
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated 2 weeks ago
- Coding Genome Reconstruction using Iso-Seq data☆61Updated 3 years ago
- finshingTool☆54Updated 8 years ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Updated 4 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆32Updated last year
- SV caller for nanopore data☆92Updated 5 years ago