aidenlab / 3d-dnaLinks
3D de novo assembly (3D DNA) pipeline
☆218Updated last year
Alternatives and similar repositories for 3d-dna
Users that are interested in 3d-dna are comparing it to the libraries listed below
Sorting:
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆283Updated 9 months ago
- Fast and accurately polish the genome generated by long reads.☆236Updated 10 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆282Updated 2 weeks ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆314Updated last month
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Updated 4 months ago
- A minimap2 frontend for PacBio native data formats☆205Updated last week
- Any Way to Show Multi genomic Synteny☆210Updated 4 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 3 months ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆271Updated last month
- Fast and accurate de novo assembler for long reads☆396Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆367Updated last month
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆305Updated last year
- PASA software☆194Updated 9 months ago
- Jasmine: SV Merging Across Samples☆231Updated 11 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆165Updated 4 months ago
- De-Novo Repeat Discovery Tool☆223Updated 4 months ago
- Tool to plot synteny and structural rearrangements between genomes☆329Updated 7 months ago
- Long read / genome alignment software☆305Updated last year
- Program for aligning DNA sequences, a pairwise aligner.☆230Updated 5 months ago
- ☆218Updated 3 weeks ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆242Updated this week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆227Updated 4 months ago
- TransDecoder source☆298Updated last month
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆193Updated last year
- Read trimming tool for Illumina NGS data.☆147Updated 10 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆176Updated last year