aidenlab / 3d-dnaLinks
3D de novo assembly (3D DNA) pipeline
☆212Updated last year
Alternatives and similar repositories for 3d-dna
Users that are interested in 3d-dna are comparing it to the libraries listed below
Sorting:
- Fast and accurately polish the genome generated by long reads.☆225Updated 4 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆256Updated 3 weeks ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆214Updated last month
- ☆209Updated 4 months ago
- Any Way to Show Multi genomic Synteny☆189Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆306Updated last month
- Generate an interactive dot plot from mummer or minimap alignments☆202Updated last year
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆254Updated 5 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆138Updated 3 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated 7 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆230Updated 4 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 4 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆279Updated last week
- Fast and accurate de novo assembler for long reads☆387Updated last year
- A bioinformatics tool for working with modified bases☆191Updated 2 weeks ago
- De-Novo Repeat Discovery Tool☆212Updated last month
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆135Updated 2 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆342Updated this week
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆185Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆301Updated last year
- Synteny and Rearrangement Identifier☆386Updated last month
- Earl Grey: A fully automated TE curation and annotation pipeline☆170Updated last week
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆204Updated 2 months ago
- Genome Assembly and Annotation Service code☆212Updated last year
- ☆194Updated last month
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆188Updated last year
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆199Updated 2 weeks ago
- Extensive de-novo TE Annotator☆384Updated 2 months ago
- Read trimming tool for Illumina NGS data.☆136Updated 10 years ago
- Nanopore demultiplexing, QC and alignment pipeline☆201Updated last week