schneebergerlab / AMPRIL-genomesLinks
scripts for the project of seven thaliana genomes assembly
☆40Updated 4 years ago
Alternatives and similar repositories for AMPRIL-genomes
Users that are interested in AMPRIL-genomes are comparing it to the libraries listed below
Sorting:
- Pan-genome Construction and Population Structure Variation Calling pipeline☆41Updated 10 months ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆42Updated 2 months ago
- ☆30Updated 6 months ago
- A tool for performing collinearity-incorporating homology inference☆32Updated last year
- ☆24Updated 2 years ago
- ☆25Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆41Updated last year
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 6 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆28Updated 6 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆41Updated 5 months ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- ☆42Updated last year
- ☆34Updated 10 months ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- ☆43Updated last year
- Analyses of sex chromosome evolution in songbirds☆16Updated 6 years ago
- Likelihood-based Selective Sweep Detection☆39Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 2 months ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆30Updated 5 months ago
- Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning☆29Updated 11 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆27Updated 11 months ago
- ☆16Updated 3 years ago
- Dynamic Elongation of a Genome Assembly Path☆21Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆55Updated last month
- ☆40Updated 2 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- This is a method to find telomeres and centromeres in plants.☆41Updated 2 years ago