scripts for the project of seven thaliana genomes assembly
☆42May 22, 2021Updated 5 years ago
Alternatives and similar repositories for AMPRIL-genomes
Users that are interested in AMPRIL-genomes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆97Jan 14, 2025Updated last year
- ☆16Feb 22, 2022Updated 4 years ago
- Bash scripts and data used in pantranscriptomic paper☆25Oct 21, 2022Updated 4 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Mar 17, 2025Updated last year
- tomato graph pangenome☆95Dec 13, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆12Feb 16, 2026Updated 8 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆45Sep 22, 2025Updated last year
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆53Sep 22, 2025Updated last year
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- ☆12Apr 10, 2021Updated 5 years ago
- ☆11Mar 14, 2026Updated 7 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- methods for orphan gene prediction paper optimization☆25Dec 24, 2021Updated 4 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆23Aug 12, 2026Updated 2 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆203Aug 17, 2026Updated 2 months ago
- several scripts for bioinformatics☆25Nov 27, 2025Updated 11 months ago
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- Scripting analyses of genomes in Ensembl Plants☆45Apr 22, 2026Updated 6 months ago
- A tool for performing collinearity-incorporating homology inference☆34Jul 17, 2026Updated 3 months ago
- Source code from Zhang et al., (2014) Genomic data of avian phylogenomics project. GigaScience 3:26☆37Dec 21, 2023Updated 2 years ago
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Dec 3, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tools for haplotype-wise reconstruction of pseudomolecules☆23Jul 29, 2026Updated 3 months ago
- A tool for recovering synteny blocks from multiple alignment☆34Oct 18, 2021Updated 5 years ago
- ☆12Jun 12, 2023Updated 3 years ago
- ARBitR: Assembly Refinement with Barcode-identity-tagged Reads☆10Oct 22, 2020Updated 6 years ago
- Strand and WGD aware syntenic gene identification☆16Oct 16, 2025Updated last year
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- B73Ab10 genome assembly methods☆17Jan 21, 2022Updated 4 years ago
- ☆78Dec 4, 2019Updated 6 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆27Jan 18, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆27Jul 26, 2026Updated 3 months ago
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 10 months ago
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated last year
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆15Oct 1, 2021Updated 5 years ago
- Perform GWAS with gemma in a simple pipeline☆28Apr 26, 2025Updated last year
- GOMAP-Singularity is the containerized version of GOMAP☆11Jul 16, 2023Updated 3 years ago
- Bioinformatics scripts for genome analysis☆17Oct 26, 2022Updated 4 years ago