scripts for the project of seven thaliana genomes assembly
☆42May 22, 2021Updated 4 years ago
Alternatives and similar repositories for AMPRIL-genomes
Users that are interested in AMPRIL-genomes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detailed bioinformatics scripts and methods used in the NAM genome paper.☆91Jan 14, 2025Updated last year
- scripts for sequence and feature conversion, annotation, analysis ...☆28Mar 17, 2025Updated last year
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- ☆11Mar 14, 2026Updated last week
- ☆12Apr 10, 2021Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Dec 24, 2021Updated 4 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- B73Ab10 genome assembly methods☆16Jan 21, 2022Updated 4 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆20Feb 13, 2026Updated last month
- ☆14Feb 22, 2022Updated 4 years ago
- tomato graph pangenome☆88Dec 13, 2022Updated 3 years ago
- ☆12Feb 16, 2026Updated last month
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Nov 22, 2019Updated 6 years ago
- ☆27Aug 29, 2025Updated 6 months ago
- A tool for recovering synteny blocks from multiple alignment☆32Oct 18, 2021Updated 4 years ago
- ☆12Jun 12, 2023Updated 2 years ago
- ☆13Nov 15, 2017Updated 8 years ago
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Oct 1, 2021Updated 4 years ago
- ☆78Dec 4, 2019Updated 6 years ago
- Perform GWAS with gemma in a simple pipeline☆27Apr 26, 2025Updated 10 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆49Sep 22, 2025Updated 6 months ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- Bioinformatics scripts for genome analysis☆17Oct 26, 2022Updated 3 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 2 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Sep 22, 2025Updated 6 months ago
- GOMAP-Singularity is the containerized version of GOMAP☆11Jul 16, 2023Updated 2 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Jan 11, 2021Updated 5 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- iTAK☆48May 22, 2024Updated last year
- ☆44May 8, 2024Updated last year
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆189Oct 15, 2025Updated 5 months ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Sep 5, 2025Updated 6 months ago
- ☆29Apr 16, 2023Updated 2 years ago
- ☆23Oct 30, 2022Updated 3 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- Strand and WGD aware syntenic gene identification☆16Oct 16, 2025Updated 5 months ago