☆33May 19, 2025Updated last year
Alternatives and similar repositories for CellProfileLibrary
Users that are interested in CellProfileLibrary are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CosMx Spatial Molecular Imager-derived cell profiles to aid in cell typing of SMI data.☆37Jan 24, 2025Updated last year
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆43Feb 5, 2026Updated 5 months ago
- Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of …☆12Dec 8, 2021Updated 4 years ago
- Repository for custom module scripts for SMIDA☆13May 19, 2025Updated last year
- ☆12Aug 2, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for normalisation of spatial transcriptomics data☆18Updated this week
- Additional code and analysis from the single-cell integration benchmarking project☆73Dec 19, 2022Updated 3 years ago
- This is the repository for SeCNV, a single cell copy number profiling tool.☆12Dec 12, 2024Updated last year
- ☆27May 16, 2025Updated last year
- Software used for papers published by CAUSALab members☆12Oct 23, 2025Updated 9 months ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆23Sep 29, 2025Updated 9 months ago
- Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022☆10Jan 12, 2022Updated 4 years ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆160Aug 3, 2025Updated 11 months ago
- Gene expression deconvolution using dampened weighted least squares☆37Feb 4, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An R package for performing cell typing in SMI and other single cell data☆51May 1, 2026Updated 2 months ago
- Whole mouse brain snATAC seq analysis☆29Apr 18, 2025Updated last year
- ☆16Oct 18, 2023Updated 2 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆45Feb 20, 2026Updated 5 months ago
- Repository for Cibersortx☆63Mar 18, 2021Updated 5 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆68Mar 14, 2024Updated 2 years ago
- ☆19Mar 6, 2019Updated 7 years ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆151Feb 20, 2025Updated last year
- Simple ftrl implementation in R for the AVAZU CTR Competition in R☆13Jan 21, 2015Updated 11 years ago
- ☆15Oct 24, 2025Updated 9 months ago
- Reproducible analyses for the NicheCompass manuscript☆14Jul 3, 2025Updated last year
- Analysis the association between caffeine intake and gallstones and cholecystectomy among U.S adults☆12Apr 20, 2021Updated 5 years ago
- ☆12Dec 6, 2023Updated 2 years ago
- Code used for the paper☆14Jan 5, 2024Updated 2 years ago
- scPred package for cell type prediction from scRNA-seq data☆105Jan 18, 2024Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆28Jul 13, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Cluster Identity Predictor (R package implementation)☆22Mar 8, 2022Updated 4 years ago
- Biological insights into the epigenetic ageing clock☆11Feb 11, 2020Updated 6 years ago
- ☆16May 13, 2022Updated 4 years ago
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆112Jun 27, 2026Updated 3 weeks ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Jul 2, 2026Updated 3 weeks ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆22May 27, 2026Updated last month
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆15Jan 27, 2023Updated 3 years ago