Nanostring-Biostats / InSituType
An R package for performing cell typing in SMI and other single cell data
☆33Updated 3 months ago
Alternatives and similar repositories for InSituType:
Users that are interested in InSituType are comparing it to the libraries listed below
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆68Updated 2 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆31Updated 9 months ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆66Updated this week
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆57Updated 11 months ago
- Pan-Cancer Single Cell Classifier☆66Updated 9 months ago
- ☆41Updated this week
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆61Updated 6 months ago
- .h5mu files interface for Seurat☆28Updated last year
- ☆38Updated 3 months ago
- ☆47Updated 2 years ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- R package for pathway analysis in scRNA-seq data☆71Updated 7 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆25Updated 7 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated last month
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- Multi-resolution Variational Inference☆22Updated 2 weeks ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆35Updated 6 months ago
- Stitch multiple Visium slides together☆15Updated last year
- Repository to perform mapping of new datasets to the Human Lung Cell Atlas.☆19Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆73Updated 10 months ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆35Updated 3 weeks ago
- ☆36Updated last year
- ☆36Updated 5 months ago
- AnnData interoperability in R