Alternatives and similar repositories for SpatialOmicsOverlay

Users that are interested in SpatialOmicsOverlay are comparing it to the libraries listed below

• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆28Updated 11 months ago
• akoyabio / phenoptr
  Helper functions for working with inForm data.
  ☆18Updated 3 years ago
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆36Updated 3 months ago
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆21Updated last month
• saezlab / MOFAcellulaR
  R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)
  ☆11Updated 2 years ago
• nolanlab / SpatialScore
  R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…
  ☆15Updated 3 years ago
• BodenmillerGroup / cytomapper
  R package for visualization of highly multiplexed imaging data
  ☆33Updated 3 months ago
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆39Updated 3 months ago
• miccec / GBMstates
  Scripts from the GBM cellular states paper
  ☆19Updated 4 years ago
• bm2-lab / SpaDo
  Multi-slice Spatial Transcriptome Domain Analysis.
  ☆12Updated 9 months ago
• estellad / SpatialExperimentIO
  Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.
  ☆16Updated 4 months ago
• bdsc-tds / SPLIT
  Profile purification of single-cell spatial transcriptomics data
  ☆17Updated 3 weeks ago
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆34Updated 4 months ago
• drighelli / SpatialExperiment
  ☆70Updated 3 months ago
• ImmuneDynamics / Spectre
  A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.
  ☆63Updated this week
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆21Updated 2 years ago
• SydneyBioX / scClassify
  Hierarchical classification of cells
  ☆25Updated last year
• Nanostring-Biostats / GeomxTools
  Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…
  ☆45Updated this week
• Sanofi-Public / spatialone-pipeline
  Spatial One
  ☆28Updated 10 months ago
• BiomedicalMachineLearning / Spacell
  ☆26Updated 5 years ago
• pachterlab / SpatialFeatureExperiment
  Extension of SpatialExperiment with sf
  ☆55Updated last month
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆45Updated 3 years ago
• jbergenstrahle / STUtility
  ☆53Updated 2 years ago
• JEFworks-Lab / MERINGUE
  characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…
  ☆80Updated 3 years ago
• BodenmillerGroup / IMCDataAnalysis
  R based workflow for multiplexed imaging data
  ☆32Updated 2 months ago
• vitessce / vitessceR
  R API and htmlwidget for Vitessce
  ☆42Updated last month
• amesch441 / iSCALE
  Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms
  ☆16Updated 4 months ago
• CamaraLab / STvEA
  Spatially-resolved Transcriptomics via Epitope Anchoring
  ☆19Updated last year
• ludvigla / semla
  ☆91Updated last week
• damienArnol / svca
  ☆13Updated 6 years ago