Nanostring-Biostats / SpatialOmicsOverlayLinks
Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
☆24Updated last week
Alternatives and similar repositories for SpatialOmicsOverlay
Users that are interested in SpatialOmicsOverlay are comparing it to the libraries listed below
Sorting:
- ☆29Updated last year
- Helper functions for working with inForm data.☆18Updated 3 years ago
- ☆24Updated 6 months ago
- Methods for visualization and analysis of spatially-resolved gene expression☆21Updated last month
- An R package for performing cell typing in SMI and other single cell data☆40Updated 4 months ago
- ☆71Updated 4 months ago
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆45Updated last week
- Multi-slice Spatial Transcriptome Domain Analysis.☆12Updated 9 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated 4 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- Spatial One☆28Updated 11 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆11Updated 2 years ago
- R API and htmlwidget for Vitessce☆42Updated last month
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆16Updated 3 weeks ago
- R package for normalisation of spatial transcriptomics data☆13Updated 3 months ago
- Hierarchical classification of cells☆26Updated last year
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated 3 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆34Updated 4 months ago
- Extension of SpatialExperiment with sf☆55Updated last week
- ☆53Updated 2 years ago
- Analyzing cellular niches in spatial transcriptomics data☆30Updated 10 months ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆31Updated 8 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆80Updated 3 years ago
- R based workflow for multiplexed imaging data☆32Updated 3 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆15Updated 4 years ago
- ☆14Updated this week
- ☆39Updated last year
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- ☆26Updated 5 years ago
- ☆29Updated 3 years ago