Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
☆23Sep 29, 2025Updated 10 months ago
Alternatives and similar repositories for SpatialOmicsOverlay
Users that are interested in SpatialOmicsOverlay are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆48Sep 29, 2025Updated 10 months ago
- Repository for custom module scripts for SMIDA☆13May 19, 2025Updated last year
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆113Jun 27, 2026Updated last month
- Spatial transcriptomics analyses and decoding in R☆26Jul 8, 2026Updated last month
- An R package for performing cell typing in SMI and other single cell data☆53May 1, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆38Jul 31, 2026Updated 2 weeks ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆43Feb 5, 2026Updated 6 months ago
- ☆17Sep 13, 2024Updated last year
- UNet script, model, sample data☆14Feb 19, 2025Updated last year
- ☆12Updated this week
- CosMx Spatial Molecular Imager-derived cell profiles to aid in cell typing of SMI data.☆38Jan 24, 2025Updated last year
- ☆34Feb 25, 2025Updated last year
- R functions underlying OmicsNet☆20Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 5 months ago
- The official QuPath extension for InstanSeg☆29Jul 2, 2026Updated last month
- tension inference for epithelial cells☆20Nov 6, 2023Updated 2 years ago
- ☆74May 28, 2025Updated last year
- Helper functions for working with inForm data.☆25May 3, 2022Updated 4 years ago
- ☆30Oct 4, 2024Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆49Aug 7, 2021Updated 5 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆41May 7, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Extension of SpatialExperiment with sf☆57May 6, 2026Updated 3 months ago
- ☆33May 19, 2025Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …