Alternatives and similar repositories for SpatialOmicsOverlay:

Users that are interested in SpatialOmicsOverlay are comparing it to the libraries listed below

• bm2-lab / SpaDo
  Multi-slice Spatial Transcriptome Domain Analysis.
  ☆11Updated 4 months ago
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆20Updated 2 years ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆26Updated 6 months ago
• akoyabio / phenoptr
  Helper functions for working with inForm data.
  ☆14Updated 2 years ago
• nolanlab / SpatialScore
  R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…
  ☆14Updated 3 years ago
• kaishumason / NicheDE
  NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.
  ☆17Updated 6 months ago
• BodenmillerGroup / imcRtools
  An R package for handling and analysing imaging mass cytometry data
  ☆26Updated 5 months ago
• CamaraLab / STvEA
  Spatially-resolved Transcriptomics via Epitope Anchoring
  ☆18Updated last year
• saezlab / MOFAcellulaR
  R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)
  ☆10Updated last year
• LTLA / scRNAseq
  Clone of the Bioconductor repository for the scRNAseq package.
  ☆25Updated 3 months ago
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆31Updated last month
• theMILOlab / SPATA
  SPATA Package for spatial gene expression analysis
  ☆22Updated 2 years ago
• drighelli / SpatialExperiment
  ☆61Updated 9 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆34Updated 2 months ago
• pachterlab / concordexR
  Compute the neighborhood consolidation matrix and identify SHRs
  ☆13Updated 3 months ago
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆33Updated 3 months ago
• rikenbit / scTensor
  R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
  ☆34Updated 2 years ago
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆23Updated 2 years ago
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆34Updated 4 months ago
• BiomedicalMachineLearning / Spacell
  ☆25Updated 5 years ago
• phipsonlab / SuperCellCyto
  SuperCell for Cytometry data
  ☆12Updated last year
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆41Updated last week
• saezlab / MOFAcell
  Code used for muti cellular factor analysis
  ☆13Updated last year
• wanglab-broad / CAST
  CAST package
  ☆34Updated 5 months ago
• TrigosTeam / SPIAT
  ☆22Updated last month
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆36Updated last month
• Nanostring-Biostats / SpatialDecon
  The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…
  ☆38Updated 4 months ago
• miccec / GBMstates
  Scripts from the GBM cellular states paper
  ☆18Updated 4 years ago
• ElementoLab / utag
  ☆34Updated last year
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 2 years ago