Nanostring-Biostats / SpatialOmicsOverlay

Related projects ⓘ

Alternatives and complementary repositories for SpatialOmicsOverlay

• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆23Updated last month
• drighelli / SpatialExperiment
  ☆55Updated 4 months ago
• theMILOlab / SPATA
  SPATA Package for spatial gene expression analysis
  ☆21Updated 2 years ago
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆21Updated this week
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆18Updated last year
• jbergenstrahle / STUtility
  ☆47Updated last year
• BiomedicalMachineLearning / Spacell
  ☆25Updated 5 years ago
• BodenmillerGroup / imcRtools
  An R package for handling and analysing imaging mass cytometry data
  ☆22Updated 3 weeks ago
• CamaraLab / STvEA
  Spatially-resolved Transcriptomics via Epitope Anchoring
  ☆18Updated 7 months ago
• saezlab / MOFAcellulaR
  R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)
  ☆8Updated last year
• JEFworks-Lab / MERINGUE
  characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…
  ☆59Updated 2 years ago
• kaishumason / NicheDE
  NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.
  ☆15Updated last month
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆23Updated 2 years ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆31Updated 6 months ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆27Updated this week
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆27Updated last month
• BIMSBbioinfo / VoltRon
  Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration
  ☆41Updated this week
• saezlab / MOFAcell
  Code used for muti cellular factor analysis
  ☆12Updated 11 months ago
• almaan / eggplant
  ☆20Updated 2 years ago
• nolanlab / SpatialScore
  R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…
  ☆12Updated 3 years ago
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆29Updated 3 months ago
• miccec / GBMstates
  Scripts from the GBM cellular states paper
  ☆18Updated 3 years ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆25Updated last year
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆20Updated 4 months ago
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆45Updated last week
• LTLA / scRNAseq
  Clone of the Bioconductor repository for the scRNAseq package.
  ☆24Updated 5 months ago
• biosurf / cyCombine
  Robust Integration of Single-Cell Cytometry Datasets
  ☆24Updated last month
• Nanostring-Biostats / SpatialDecon
  The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…
  ☆33Updated 10 months ago
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆21Updated 4 years ago
• raphael-group / GASTON
  ☆16Updated 2 months ago