Alternatives and similar repositories for epigenetic_ageing_clock

Users that are interested in epigenetic_ageing_clock are comparing it to the libraries listed below

• wkl1990 / Illumina450K-methylation
  From IDAT to beta.
  ☆25Updated 7 years ago
• MD-Anderson-Bioinformatics / MBatch
  Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage
  ☆12Updated 5 years ago
• lhqing / mouse_brain_2020
  Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"
  ☆14Updated 5 years ago
• Roy-lab / HiC-Reg
  HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals
  ☆11Updated 5 years ago
• deeptools / docker-galaxy-hicexplorer
  Galaxy Docker Image for the HiCExplorer
  ☆10Updated 6 years ago
• Christensen-Lab-Dartmouth / methyLiftover
  A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set
  ☆18Updated 9 years ago
• TheJacksonLaboratory / tcga_subtype_classification
  Detecting cancer subtypes with machine learning.
  ☆10Updated 5 years ago
• huishenlab / compartmap
  Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq
  ☆14Updated 3 weeks ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• YuLab-SMU / GeoTcgaData
  Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA
  ☆28Updated 2 years ago
• markrobinsonuzh / scRNAseq_clustering_comparison
  A study to compare methods for clustering of scRNA-seq data
  ☆43Updated last year
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆14Updated 6 years ago
• ma-compbio / CTCF-MP
  ☆12Updated 5 years ago
• cit-bioinfo / mMCP-counter
  Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data
  ☆12Updated 3 years ago
• morrislab / TrackSig
  A framework to infer mutational signatures in cancer over time
  ☆56Updated 6 years ago
• yachielab / Interstellar
  INTERSTELLAR: Interpretation, scalable transformation, and emulation of large-scale sequencing reads
  ☆17Updated last year
• hartwigmedical / scripts
  ☆21Updated this week
• Papatheodorou-Group / CATD_snakemake
  Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…
  ☆15Updated 7 months ago
• cozygene / glint
  ☆24Updated 5 years ago
• taoshengxu / CancerSubtypes
  ☆17Updated 2 years ago
• caravagnalab / mobster
  Model-based tumour subclonal deconvolution using population genetics
  ☆33Updated 2 weeks ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 7 years ago
• khodosevichlab / CellAnnotatoR
  Automated marker-based annotation of cell types
  ☆13Updated 3 years ago
• navinlabcode / copykit
  Toolkit for single-cell copy number analysis
  ☆25Updated this week
• wanqingshao / TE_expression_in_scRNAseq
  ☆18Updated 5 years ago
• jiujiezz / tsnad
  Detecting somatic mutations and predicting tumor-specific neo-antigens
  ☆29Updated 4 years ago
• sinanugur / cellsnake
  Cellsnake tool main repo
  ☆35Updated last year
• Niinleslie / MesKit
  A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations
  ☆35Updated 3 years ago
• weng-lab / umitools
  A toolset for handling sequencing data with unique molecular identifiers (UMIs)
  ☆16Updated 7 years ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆14Updated 3 years ago