nicolerg / ssGSEA2Links
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
☆12Updated 3 years ago
Alternatives and similar repositories for ssGSEA2
Users that are interested in ssGSEA2 are comparing it to the libraries listed below
Sorting:
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆27Updated 3 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated this week
- ☆85Updated last year
- ☆63Updated 5 years ago
- scWGCNA☆61Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆98Updated 8 months ago
- ☆90Updated 5 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆45Updated 2 weeks ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆95Updated last week
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Easy and comprehensive biological network reconstruction and analysis☆35Updated 4 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆63Updated 2 months ago
- R package for Pathway RespOnsive GENe activity inference☆114Updated 3 years ago
- Bayesian network plot for the enrichment analysis results☆67Updated last year
- This is the official repository for the Human Cell Atlas Heart project.☆32Updated 5 years ago
- Unified access to several second-generation deconvolution methods☆91Updated last month
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆99Updated 2 years ago
- ☆18Updated last year
- Using TCR and expression for sequence embedding☆62Updated last month
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated 2 weeks ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- Pan-Cancer Single Cell Classifier☆83Updated last year
- ☆25Updated 3 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- A docker image for single-cell analysis☆103Updated 3 months ago
- Create cisTarget databases☆55Updated 7 months ago
- ☆75Updated 2 years ago