Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
☆13Jan 27, 2023Updated 3 years ago
Alternatives and similar repositories for ssGSEA2
Users that are interested in ssGSEA2 are comparing it to the libraries listed below
Sorting:
- Python Client Library for the G2P Portal API☆15Aug 14, 2025Updated 6 months ago
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆18Mar 18, 2024Updated last year
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆20Oct 10, 2024Updated last year
- ☆22Feb 2, 2025Updated last year
- ☆21May 6, 2025Updated 9 months ago
- Ressources for Boinformatics Trainings☆12Nov 20, 2023Updated 2 years ago
- python scripts for proteogenomics analysis☆10Oct 17, 2019Updated 6 years ago
- Clonal structure identification through penalizing pairwise differences☆11Nov 25, 2025Updated 3 months ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 9 months ago
- Supporting information of 'Single-cell RNA sequencing of a European and an African lymphoblastoid cell line'☆10Feb 27, 2020Updated 6 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 4 years ago
- Leaf scale radiative transfer model based on spectral invariant properties - Matlab code☆13Nov 5, 2020Updated 5 years ago
- set of functions for genomics data analysis☆10Apr 22, 2022Updated 3 years ago
- Source files for the SmartRoot software. Website: https://smartroot.github.io/☆16Jun 28, 2022Updated 3 years ago
- Config and setup to run nf-core/raredisease pipeline☆10Sep 11, 2025Updated 5 months ago
- ☆11Aug 21, 2018Updated 7 years ago
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆10May 31, 2024Updated last year
- MSConnect is a Web-based integrated plateform to combine data storage/backup, process and visualization of MS-based Proteomics data.☆17Aug 19, 2025Updated 6 months ago
- Interactive visualisation of CellphoneDB results☆12Jan 15, 2025Updated last year
- The code for running the analysis component of CSI-Microbe☆12Jan 3, 2024Updated 2 years ago
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- The Integrated Earth System Model (iESM) couples GCAM (http://www.globalchange.umd.edu/gcam/) to the Community Earth System Model☆15Jun 26, 2017Updated 8 years ago
- An r interface to perform ROMA☆10Aug 24, 2018Updated 7 years ago
- PyTorch Implementation of CLEAN-Contact: Contrastive Learning-enabled Enzyme Functional Annotation Prediction with Structural Inference☆11May 29, 2024Updated last year
- REEV: Explanation and Evaluation of Variants☆11Feb 23, 2026Updated last week
- ☆14Aug 5, 2022Updated 3 years ago
- PTa Analysis TOolkit☆14Updated this week
- A customizable genetic variants file format converter.☆11Oct 7, 2025Updated 4 months ago
- S-LDSC scripts for use on MR server.☆10Sep 23, 2021Updated 4 years ago
- This contains all the files and scripts necessary to participate in the FTICR-MS data analysis demonstration at the SBR SFA Community Wor…☆18Jul 8, 2020Updated 5 years ago
- ☆12Oct 31, 2020Updated 5 years ago
- Conversion software tool for producing both annotation and tree files for GraPhlAn☆11Feb 2, 2022Updated 4 years ago
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆14Feb 17, 2026Updated 2 weeks ago
- Github repository for nanoSPLITS manuscript data and R scripts☆10Oct 11, 2024Updated last year
- Lung cancer 10X analysis☆11Dec 30, 2020Updated 5 years ago
- Generating tool descriptors from bio.tools☆10Jun 13, 2018Updated 7 years ago
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆15Updated this week
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 7 years ago
- Phenotype-based Diagnosis Tool for Rare Diseases☆13Updated this week