Alternatives and similar repositories for ssGSEA2

Users that are interested in ssGSEA2 are comparing it to the libraries listed below

• PierreBSC / Viral-Track
  ☆63Updated 5 years ago
• UPSUTER / GEMLI
  ☆33Updated last year
• liulab-dfci / RIMA_pipeline
  ☆90Updated 5 months ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆56Updated 2 years ago
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆46Updated last year
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆44Updated 5 years ago
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆63Updated 2 months ago
• wbaopaul / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆81Updated 3 weeks ago
• BMILAB / scAPAtrap
  ☆25Updated 3 months ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆97Updated 8 months ago
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆82Updated 3 years ago
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆82Updated 9 months ago
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆53Updated 2 years ago
• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆80Updated 2 years ago
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆66Updated last year
• liulab-dfci / lisa2
  ☆33Updated 3 years ago
• KChen-lab / METAFlux
  ☆85Updated last year
• alserglab / mascarade
  Generate masks for scRNA-seq clusters on t-SNE or UMAP plots
  ☆44Updated last week
• chung-lab / SCAFE
  Single Cell Analysis of Five'Ends
  ☆50Updated last year
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆65Updated 2 years ago
• statgen / popscle
  A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…
  ☆58Updated 4 years ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆92Updated last month
• McGranahanLab / TcellExTRECT
  ☆48Updated last year
• cartal / HCA_Heart
  This is the official repository for the Human Cell Atlas Heart project.
  ☆32Updated 5 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• rpolicastro / scProportionTest
  ☆74Updated 2 years ago
• nf-core / scdownstream
  A single cell transcriptomics pipeline for QC, integration and making the data presentable
  ☆83Updated last week
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆91Updated 3 weeks ago
• aertslab / create_cisTarget_databases
  Create cisTarget databases
  ☆55Updated 7 months ago