powellgenomicslab / scPredLinks
scPred package for cell type prediction from scRNA-seq data
☆93Updated last year
Alternatives and similar repositories for scPred
Users that are interested in scPred are comparing it to the libraries listed below
Sorting:
- Unified access to several second-generation deconvolution methods☆86Updated last week
- marker-based purification of cell types from single-cell RNA-seq datasets☆131Updated 3 months ago
- Pan-Cancer Single Cell Classifier☆81Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆90Updated 5 months ago
- scWGCNA☆61Updated 3 years ago
- ☆61Updated 4 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 6 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆79Updated 9 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated last month
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 4 months ago
- ☆43Updated 4 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆65Updated last year
- Metacell - Single-cell mRNA Analysis☆117Updated 9 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆70Updated 4 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- R package for semi-supervised single-cell data integration☆90Updated 2 months ago
- ☆76Updated last year
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- R package for single cell and other data analysis using diffusion maps☆89Updated 11 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆77Updated 9 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆44Updated last week
- R package for Pathway RespOnsive GENe activity inference☆110Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 6 months ago
- ☆58Updated last year
- Using TCR and expression for sequence embedding☆60Updated 2 months ago
- ☆41Updated 4 years ago