powellgenomicslab / scPredLinks
scPred package for cell type prediction from scRNA-seq data
☆96Updated last year
Alternatives and similar repositories for scPred
Users that are interested in scPred are comparing it to the libraries listed below
Sorting:
- Unified access to several second-generation deconvolution methods☆88Updated this week
- scWGCNA☆61Updated 3 years ago
- ☆45Updated last month
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆82Updated 8 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆93Updated 7 months ago
- Pan-Cancer Single Cell Classifier☆83Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆134Updated 5 months ago
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆85Updated 8 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated last month
- ☆61Updated 4 years ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated last year
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Functional Inference of Gene Regulation☆49Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 8 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆91Updated 3 weeks ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 6 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆83Updated 9 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆44Updated last month
- Methods to compute Local Inverse Simpson's Index (LISI)☆72Updated 4 years ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆92Updated last month
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 7 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago