powellgenomicslab / scPredLinks
scPred package for cell type prediction from scRNA-seq data
☆92Updated last year
Alternatives and similar repositories for scPred
Users that are interested in scPred are comparing it to the libraries listed below
Sorting:
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 3 months ago
- Unified access to several second-generation deconvolution methods☆73Updated 3 weeks ago
- scWGCNA☆61Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆121Updated last month
- ☆47Updated 3 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 4 months ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated 11 months ago
- Pan-Cancer Single Cell Classifier☆77Updated last year
- ☆41Updated 2 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Methods to compute Local Inverse Simpson's Index (LISI)☆68Updated 4 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated last week
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- R package for semi-supervised single-cell data integration☆88Updated 3 weeks ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated 11 months ago
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆87Updated 4 months ago
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆80Updated 4 months ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆65Updated this week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated last month
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆76Updated 7 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆73Updated last month
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- software to detect doublets☆94Updated 8 months ago
- ☆59Updated 11 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Tools for single-cell data processing☆126Updated last year