powellgenomicslab / scPredLinks
scPred package for cell type prediction from scRNA-seq data
☆96Updated 2 years ago
Alternatives and similar repositories for scPred
Users that are interested in scPred are comparing it to the libraries listed below
Sorting:
- Pan-Cancer Single Cell Classifier☆83Updated last year
- ☆46Updated 2 months ago
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆37Updated last year
- scWGCNA☆61Updated 3 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated last month
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- Unified access to several second-generation deconvolution methods☆89Updated 3 weeks ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆44Updated last month
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆82Updated 9 months ago
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆138Updated 6 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆96Updated 8 months ago
- ☆46Updated 3 years ago
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆86Updated 9 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆72Updated 4 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 8 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 9 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 5 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated this week
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Metacell - Single-cell mRNA Analysis☆118Updated last year
- Analysis of cell-cell communication at single-cell resolution☆106Updated last year
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- ☆41Updated 4 years ago