Additional code and analysis from the single-cell integration benchmarking project
☆75Dec 19, 2022Updated 3 years ago
Alternatives and similar repositories for scib-reproducibility
Users that are interested in scib-reproducibility are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆84Jan 23, 2025Updated last year
- Benchmarking analysis of data integration tools☆432Apr 27, 2026Updated 4 months ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 3 years ago
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆80Sep 17, 2026Updated last week
- ☆68Jul 13, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This repository contains all code used for the Human Lung Cell Atlas project.☆61Aug 21, 2023Updated 3 years ago
- ☆33May 19, 2025Updated last year
- ☆17Nov 13, 2021Updated 4 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆42Jan 6, 2021Updated 5 years ago
- Accelerated, Python-only, single-cell integration benchmarking metrics☆97Updated this week
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 4 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆11Sep 20, 2022Updated 4 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- ☆14Jun 11, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆23Dec 23, 2024Updated last year
- Reference mapping for single-cell genomics☆411Jun 26, 2026Updated 2 months ago
- tutorials for spateo package☆21Dec 25, 2024Updated last year
- Workflow to reproduce results and figures for the second BeatAML manuscript☆18Jun 28, 2022Updated 4 years ago
- ☆10Oct 12, 2023Updated 2 years ago
- SPATA Package for spatial gene expression analysis☆21May 6, 2022Updated 4 years ago
- ☆29Sep 4, 2023Updated 3 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆27Oct 17, 2024Updated last year
- LaTeX template of graduate Thesis [University of Chinese Academy of Sciences]☆12Nov 7, 2017Updated 8 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆26Apr 3, 2019Updated 7 years ago
- ☆15Jan 24, 2024Updated 2 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆47Apr 12, 2023Updated 3 years ago
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated 2 years ago
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆251Apr 3, 2026Updated 5 months ago
- ☆22Jun 17, 2024Updated 2 years ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Oct 31, 2023Updated 2 years ago
- ☆23Aug 20, 2024Updated 2 years ago
- ☆36Apr 15, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆44Jan 12, 2026Updated 8 months ago
- Single-cell epigenomics analysis tools☆323Sep 12, 2026Updated last week
- ☆22Apr 16, 2024Updated 2 years ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 3 years ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- Remove unwanted batch effects☆16Updated this week
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆19Feb 22, 2022Updated 4 years ago