Repository for custom module scripts for SMIDA
☆14May 19, 2025Updated last year
Alternatives and similar repositories for CosMxDACustomModules
Users that are interested in CosMxDACustomModules are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆115Sep 8, 2026Updated 2 weeks ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆24Sep 29, 2025Updated 11 months ago
- Interactive spatial transcriptomics viewer for h5ad files☆16Mar 14, 2026Updated 6 months ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆19Sep 19, 2025Updated last year
- An R package for performing cell typing in SMI and other single cell data☆55May 1, 2026Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis☆19Apr 23, 2025Updated last year
- ☆14Feb 19, 2024Updated 2 years ago
- Interoperability between SpatialData and the Xenium Explorer☆27Jul 31, 2024Updated 2 years ago
- Code used for biomarker discovery using party (building conditional random forests)☆15May 18, 2018Updated 8 years ago
- ☆33May 19, 2025Updated last year
- Identification of viral RdRPs in single-cell RNA sequencing data☆15Mar 12, 2026Updated 6 months ago
- An analysis pipeline for Nanostring nCounter expression data.☆18Sep 11, 2026Updated last week
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated last year
- Simulation and inference of gene regulatory networks based on transcriptional bursting☆13Apr 17, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Logical Operations On Puzzles: Simple Iterative Reasoning Tests for LLMs first through wordgrids☆19Feb 19, 2025Updated last year
- R package for normalisation of spatial transcriptomics data☆20Sep 8, 2026Updated 2 weeks ago
- pygor3 repository☆10Nov 20, 2025Updated 10 months ago
- Spreadsheet template files for 9x9 and 10x10 tube storage boxes for freezing biological samples☆14Apr 18, 2025Updated last year
- A relabeling tool for tiled segmentation with Dask☆18Sep 24, 2024Updated 2 years ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆23Jul 24, 2023Updated 3 years ago
- Create analysis reports from inForm data.☆16Nov 9, 2023Updated 2 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆37May 14, 2026Updated 4 months ago
- ☆21Jun 25, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- OBSOLETE: Prototype Neo4j Knowledge Graph for Coronavirus outbreaks (see NEW VERSION: https://github.com/covid-19-net/covid-19-community)☆18Nov 25, 2020Updated 5 years ago
- ☕⛵WIP PySpark dependency management☆22Jul 8, 2018Updated 8 years ago
- ☆19Nov 18, 2025Updated 10 months ago
- Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data☆18Jun 19, 2025Updated last year
- Dell 7480 Hackintosh☆19Jun 18, 2021Updated 5 years ago
- Extension of SpatialExperiment with sf☆58May 6, 2026Updated 4 months ago
- ☆74May 28, 2025Updated last year
- Single-Cell Inference of Class Switch Recombination☆25Jun 19, 2026Updated 3 months ago
- Cancer Dependency Map package☆33Aug 16, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The MBatch R package and Docker image are designed to help assess and correct for batch effects.☆20May 31, 2024Updated 2 years ago
- Monte Carlo Reference-based Consensus Clustering☆38Mar 14, 2020Updated 6 years ago
- ☆26Jun 18, 2026Updated 3 months ago
- R interface to morpheus.js heatmap widget☆40Oct 22, 2020Updated 5 years ago
- Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory …☆15Apr 12, 2023Updated 3 years ago
- ☆26Feb 9, 2025Updated last year
- Block range of numbers in Google Voice☆15Mar 9, 2019Updated 7 years ago