Repository for custom module scripts for SMIDA
☆13May 19, 2025Updated last year
Alternatives and similar repositories for CosMxDACustomModules
Users that are interested in CosMxDACustomModules are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆23Sep 29, 2025Updated 7 months ago
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆105Updated this week
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆19Sep 19, 2025Updated 8 months ago
- Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis☆19Apr 23, 2025Updated last year
- ☆14Feb 19, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated last year
- An analysis pipeline for Nanostring nCounter expression data.☆18Apr 30, 2026Updated 3 weeks ago
- Code used for biomarker discovery using party (building conditional random forests)☆15May 18, 2018Updated 8 years ago
- ☆33May 19, 2025Updated last year
- Logical Operations On Puzzles: Simple Iterative Reasoning Tests for LLMs first through wordgrids☆18Feb 19, 2025Updated last year
- Identification of viral RdRPs in single-cell RNA sequencing data☆13Mar 12, 2026Updated 2 months ago
- Simulation and inference of gene regulatory networks based on transcriptional bursting☆13Apr 17, 2026Updated last month
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated 9 months ago
- ☕⛵WIP PySpark dependency management☆22Jul 8, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A PGN reviewer and publishing platform for the Kindle, allowing users to review annotated Chess games from their digital e-reader.☆23Apr 25, 2011Updated 15 years ago
- R package for normalisation of spatial transcriptomics data☆18Jan 21, 2026Updated 4 months ago
- pygor3 repository☆10Nov 20, 2025Updated 6 months ago
- Spreadsheet template files for 9x9 and 10x10 tube storage boxes for freezing biological samples☆12Apr 18, 2025Updated last year
- A relabeling tool for tiled segmentation with Dask☆17Sep 24, 2024Updated last year
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆19Jul 24, 2023Updated 2 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆34May 14, 2026Updated last week
- ☆25Feb 9, 2025Updated last year
- OBSOLETE: Prototype Neo4j Knowledge Graph for Coronavirus outbreaks (see NEW VERSION: https://github.com/covid-19-net/covid-19-community)☆18Nov 25, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data☆18Jun 19, 2025Updated 11 months ago
- ☆18Nov 18, 2025Updated 6 months ago
- ☆73May 28, 2025Updated 11 months ago
- Extension of SpatialExperiment with sf☆57May 6, 2026Updated 2 weeks ago
- Create analysis reports from inForm data.☆15Nov 9, 2023Updated 2 years ago
- Dell 7480 Hackintosh☆18Jun 18, 2021Updated 4 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated 8 months ago
- ☆21Mar 18, 2025Updated last year
- Interactive single cell RNA-seq analysis webserver!☆10Mar 15, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Bash scripts to simplify your life (let's hope so!)☆12Jul 21, 2025Updated 10 months ago
- Pipeline for designing custom probes against human genes☆23Jan 30, 2026Updated 3 months ago
- Monte Carlo Reference-based Consensus Clustering☆38Mar 14, 2020Updated 6 years ago
- Unbiased single-cell transcriptomic data cell type identification☆15May 7, 2024Updated 2 years ago
- Cancer Dependency Map package☆33Aug 16, 2024Updated last year
- R interface to morpheus.js heatmap widget☆40Oct 22, 2020Updated 5 years ago
- ☆10May 22, 2019Updated 7 years ago