tabdelaal / SIRV

Related projects: ⓘ

• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆27Updated 3 months ago
• jbergenstrahle / STUtility
  ☆44Updated last year
• dyxmvp / Spatial_ATAC-seq
  ☆20Updated last year
• soumelis-lab / ICELLNET
  ☆18Updated 4 months ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆19Updated 5 months ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 3 weeks ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆24Updated 8 months ago
• ETH-NEXUS / scAmpi_single_cell_RNA
  Code related to scRNA analysis using the scAmpi workflow
  ☆24Updated this week
• KChen-lab / MEDALT
  Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile
  ☆16Updated last year
• JinmiaoChenLab / ezSingleCell2
  ☆32Updated 8 months ago
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆23Updated 2 years ago
• kostkalab / vaeda
  Vaeda method for computational doublet annotation
  ☆13Updated 2 months ago
• ZornLab / Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineage
  Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…
  ☆9Updated 4 years ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆27Updated 3 years ago
• theislab / hadge
  Comprehensive pipeline for donor demultiplexing in single cell
  ☆24Updated 3 months ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆19Updated 5 months ago
• ventolab / UHCA
  UHCA
  ☆10Updated 3 years ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆18Updated last month
• jfnavarro / st_analysis
  A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
  ☆18Updated 3 years ago
• azizilab / decipher
  A single-cell analysis toolkit to jointly analyze samples from distinct conditions
  ☆18Updated last week
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆22Updated 2 years ago
• miccec / GBMstates
  Scripts from the GBM cellular states paper
  ☆18Updated 3 years ago
• quadbio / simspec
  Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)
  ☆29Updated 6 months ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆34Updated last year
• ChenWeiyan / LandSCENT
  Landscape Single Cell Entropy
  ☆19Updated 4 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆22Updated last year
• KlugerLab / GeneTrajectory-python
  Python implementation of Gene Trajectory
  ☆17Updated 2 weeks ago
• veltenlab / mitoClone
  ☆12Updated 3 years ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 4 years ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆25Updated 2 months ago