Alternatives and similar repositories for SIRV:

Users that are interested in SIRV are comparing it to the libraries listed below

• dyxmvp / Spatial_ATAC-seq
  ☆22Updated 2 years ago
• jbergenstrahle / STUtility
  ☆51Updated 2 years ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆31Updated 2 months ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆25Updated 3 years ago
• theislab / cellrank_reproducibility
  CellRank's reproducibility repository.
  ☆15Updated 3 years ago
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆22Updated last year
• harbourlab / PieParty
  represent each cell in UMAP plots as a pie chart
  ☆16Updated 3 years ago
• wanglab-broad / CAST
  CAST package
  ☆34Updated 6 months ago
• gerstung-lab / BaSISS
  Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper
  ☆25Updated 2 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 6 months ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆25Updated last year
• soumelis-lab / ICELLNET
  ☆20Updated last year
• broadchenf / Slide-tags
  ☆10Updated 2 years ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• miccec / GBMstates
  Scripts from the GBM cellular states paper
  ☆18Updated 4 years ago
• ImXman / MACA
  MACA: Marker-based automatic cell-type annotation for single cell expression data
  ☆25Updated last year
• Teichlab / gene2probe
  Pipeline for designing custom probes against human genes
  ☆16Updated 5 months ago
• ETH-NEXUS / scAmpi_single_cell_RNA
  Code related to scRNA analysis using the scAmpi workflow
  ☆25Updated 5 months ago
• ChenWeiyan / LandSCENT
  Landscape Single Cell Entropy
  ☆19Updated 4 years ago
• theislab / hadge
  Comprehensive pipeline for donor demultiplexing in single cell
  ☆24Updated 11 months ago
• theMILOlab / SPATA
  SPATA Package for spatial gene expression analysis
  ☆22Updated 3 years ago
• Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel
  ☆15Updated 2 years ago
• quadbio / organoid_regulomes
  Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids
  ☆28Updated last year
• favilaco / deconv_matching_bulk_scnRNA
  Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"
  ☆15Updated last year
• BoevaLab / ANS_signature_scoring
  ANS_signature_scoring: A gene expression signature scoring Python package.
  ☆15Updated 3 weeks ago
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆19Updated 3 months ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 4 months ago
• UPSUTER / GEMLI
  ☆30Updated 3 months ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆28Updated 5 months ago