Spatial RNA velocity
☆10Oct 3, 2024Updated last year
Alternatives and similar repositories for SIRV
Users that are interested in SIRV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- The scripts used for the analyses in TOME project☆26Nov 28, 2025Updated 9 months ago
- Dynamic inference from single-cell snapshots by optimal transport☆21Mar 14, 2024Updated 2 years ago
- Python implementation of Gene Trajectory☆29Sep 4, 2024Updated 2 years ago
- ☆18Sep 6, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Sep 23, 2025Updated 11 months ago
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆16Dec 15, 2025Updated 9 months ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆14Mar 3, 2023Updated 3 years ago
- R package for visualization of highly multiplexed imaging data☆37Aug 25, 2026Updated 3 weeks ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆16Sep 26, 2021Updated 4 years ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Jun 10, 2026Updated 3 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆28Jul 13, 2026Updated 2 months ago
- Course website for Genomic Data Visualization 2022☆16Dec 28, 2022Updated 3 years ago
- SPATA Package for spatial gene expression analysis☆21May 6, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆10Nov 29, 2022Updated 3 years ago
- ☆19Oct 4, 2022Updated 3 years ago
- ☆16Sep 16, 2026Updated last week
- ☆23Mar 29, 2023Updated 3 years ago
- Single-cell Consensus Clusters of Encoded Subspaces☆15Jul 27, 2026Updated last month
- Optimal gating strategies for flow and mass cytometry.☆16Jul 22, 2026Updated 2 months ago
- Fast reconstruction of spatial networks from bioimages.☆26Mar 27, 2026Updated 5 months ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 3 years ago
- ☆12Oct 23, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- ☆20May 5, 2024Updated 2 years ago
- Custom scripts used in "Spatiotemporal DNA Methylome Dynamics of the Developing Mammalian Fetus"☆11Oct 15, 2020Updated 5 years ago
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- A curated list of awesome deep learning applications in the field of computational biology☆11Aug 3, 2016Updated 10 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- ☆30Jul 15, 2021Updated 5 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Oct 11, 2019Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Published at Bioinformatics☆12Jul 4, 2024Updated 2 years ago
- Computational Biology & Bioinformatics Resources☆16Sep 9, 2025Updated last year
- ☆16Apr 9, 2021Updated 5 years ago
- Peak calling for 4C data☆13May 4, 2018Updated 8 years ago
- Spatially resolved transcriptomic analysis☆68Nov 17, 2022Updated 3 years ago
- ☆25May 6, 2024Updated 2 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 3 years ago