Spatial RNA velocity
☆10Oct 3, 2024Updated last year
Alternatives and similar repositories for SIRV
Users that are interested in SIRV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated last year
- The scripts used for the analyses in TOME project☆24Nov 28, 2025Updated 3 months ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆11Mar 3, 2023Updated 3 years ago
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- ☆18Sep 6, 2022Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆12Dec 15, 2025Updated 3 months ago
- Single-cell Consensus Clusters of Encoded Subspaces☆14Aug 14, 2023Updated 2 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Sep 23, 2025Updated 6 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Jan 23, 2024Updated 2 years ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Oct 13, 2025Updated 5 months ago
- R package for visualization of highly multiplexed imaging data☆34May 27, 2025Updated 9 months ago
- Helper functions for working with inForm data.☆20May 3, 2022Updated 3 years ago
- Course website for Genomic Data Visualization 2022☆16Dec 28, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- SPATA Package for spatial gene expression analysis☆21May 6, 2022Updated 3 years ago
- ☆15Jun 3, 2025Updated 9 months ago
- ☆10Nov 29, 2022Updated 3 years ago
- ☆18Oct 4, 2022Updated 3 years ago
- Dynamic inference from single-cell snapshots by optimal transport☆20Mar 14, 2024Updated 2 years ago
- Fast reconstruction of spatial networks from bioimages.☆26Apr 25, 2025Updated 11 months ago
- Optimal gating strategies for flow and mass cytometry.☆16Nov 5, 2025Updated 4 months ago
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆22Jan 21, 2026Updated 2 months ago
- ☆12Oct 23, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆23Mar 29, 2023Updated 2 years ago
- ☆19May 5, 2024Updated last year
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- A curated list of awesome deep learning applications in the field of computational biology☆11Aug 3, 2016Updated 9 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Robust quad-tree based registration on whole slide images☆20Apr 2, 2025Updated 11 months ago
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- ☆30Jul 15, 2021Updated 4 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Oct 11, 2019Updated 6 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Computational Biology & Bioinformatics Resources☆16Sep 9, 2025Updated 6 months ago
- Published at Bioinformatics☆12Jul 4, 2024Updated last year
- Peak calling for 4C data☆13May 4, 2018Updated 7 years ago
- ☆17Apr 9, 2021Updated 4 years ago
- A model-based visualization method for microbiome data☆16Oct 27, 2025Updated 4 months ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago
- Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of …☆12Dec 8, 2021Updated 4 years ago