Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports
☆11Mar 31, 2026Updated 6 months ago
Alternatives and similar repositories for scPipeline
Users that are interested in scPipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆34Nov 28, 2025Updated 10 months ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆25Jul 11, 2021Updated 5 years ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 4 years ago
- ☆14Mar 11, 2022Updated 4 years ago
- Surface Marker Detection Using Single Cell Data☆13Apr 21, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- BulkSignalR☆30Jun 23, 2026Updated 4 months ago
- R tools for analysis and visualization of single-cell subclustering data☆19Aug 28, 2026Updated last month
- Analysis of TrackMate XML outputs in R☆17Sep 18, 2026Updated last month
- ☆19Mar 8, 2023Updated 3 years ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- ☆12Aug 6, 2024Updated 2 years ago
- Simple App to visualize single cell datasets☆22Apr 12, 2018Updated 8 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆46Sep 20, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Multi-modal single cell analysis pipelines☆63Dec 11, 2025Updated 10 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Sep 14, 2026Updated last month
- ☆16Apr 4, 2023Updated 3 years ago
- My extensions for Seurat package