☆16May 13, 2022Updated 3 years ago
Alternatives and similar repositories for SCYN
Users that are interested in SCYN are comparing it to the libraries listed below
Sorting:
- This is the repository for SeCNV, a single cell copy number profiling tool.☆12Dec 12, 2024Updated last year
- a bioinformatics tool for simulating single-cell genome sequencing data☆10Dec 19, 2019Updated 6 years ago
- Single-cell COPy number Estimation☆16Dec 11, 2022Updated 3 years ago
- ☆19May 5, 2021Updated 4 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆43Nov 13, 2024Updated last year
- LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution an…☆15Mar 9, 2026Updated last week
- A robust PCA method of tumor clone and evolution inference from single-cell sequencing data.☆12May 28, 2020Updated 5 years ago
- Simple ftrl implementation in R for the AVAZU CTR Competition in R☆13Jan 21, 2015Updated 11 years ago
- Reproducible analyses for the NicheCompass manuscript☆13Jul 3, 2025Updated 8 months ago
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 4 years ago
- ☆12Dec 6, 2023Updated 2 years ago
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago
- represent each cell in UMAP plots as a pie chart☆16Sep 27, 2021Updated 4 years ago
- scSNV Mapping tool for 10X Single Cell Data☆25Dec 19, 2025Updated 3 months ago
- Quality control for phylogenetic analyses☆13Mar 9, 2026Updated last week
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Nov 17, 2024Updated last year
- Tertiary analysis package to visualize single-cell data generated by the Tapestri Platform.☆18Mar 4, 2026Updated 2 weeks ago
- ☆13Oct 2, 2019Updated 6 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Oct 27, 2022Updated 3 years ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆14Jul 24, 2025Updated 7 months ago
- Ordering gene-expression and functional events in single-cell experiments☆29Mar 7, 2026Updated last week
- Stratified squared trans-ethnic genetic correlation☆14May 12, 2022Updated 3 years ago
- ☆27Jun 4, 2023Updated 2 years ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆13Feb 13, 2026Updated last month
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆16Mar 11, 2024Updated 2 years ago
- Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates☆22Jul 11, 2024Updated last year
- An R package for generating comparative regional association plots☆18Sep 30, 2025Updated 5 months ago
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆14Dec 6, 2021Updated 4 years ago
- Fast implementation of the Neighbour-Joining method for phylogenetic inference☆18Sep 10, 2024Updated last year
- ☆16Aug 11, 2021Updated 4 years ago
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆11Feb 27, 2026Updated 2 weeks ago
- ☆24Oct 15, 2018Updated 7 years ago
- Polygenic Adaptation Likelihood Method - Inferring natural selection on complex traits from whole-genome genealogies☆16Nov 13, 2020Updated 5 years ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 8 years ago
- Imaging Mass Cytometry (IMC) file type support for napari☆12Oct 19, 2023Updated 2 years ago
- Code recipe for "Multimodal One-Shot Learning of Speech and Images"☆11Nov 21, 2018Updated 7 years ago
- SQL-like query language for the SAM/BAM file format☆29Sep 20, 2023Updated 2 years ago
- Phylogenetic Network Inference without ILS☆19Jul 31, 2022Updated 3 years ago
- nimfa - A Python Library for Nonnegative Matrix Factorization Techniques☆10Aug 30, 2018Updated 7 years ago