BioThinkLab / SCYNLinks
☆16Updated 3 years ago
Alternatives and similar repositories for SCYN
Users that are interested in SCYN are comparing it to the libraries listed below
Sorting:
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago
- Regulatory networks with Direct Information☆17Updated 6 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 3 years ago
- ☆32Updated 11 months ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Updated 2 years ago
- ☆18Updated 2 years ago
- ☆39Updated 4 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Updated 6 years ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆25Updated 8 months ago
- Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"☆16Updated last year
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 3 years ago
- Workflow for analysis of healthy human kidney by snRNAseq and snATACseq☆25Updated 2 years ago
- ☆34Updated 6 years ago
- ☆53Updated last year
- The scripts used for the analyses in TOME project☆25Updated last month
- ☆25Updated 2 years ago
- Detecting cancer subtypes with machine learning.☆10Updated 5 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 5 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆45Updated 4 months ago
- ☆39Updated 4 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆58Updated 3 years ago
- scWGCNA☆61Updated 3 years ago
- comprehensive analysis of single-cell transcriptomics data☆25Updated 3 weeks ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 7 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 9 months ago