Alternatives and similar repositories for SCYN

Users that are interested in SCYN are comparing it to the libraries listed below

• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆21Updated last year
• UPSUTER / GEMLI
  ☆32Updated 8 months ago
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated 2 years ago
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• henssenlab / TreeShapedRearrangements
  Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)
  ☆15Updated 4 years ago
• WRui / Post_Implantation
  ☆27Updated 4 years ago
• SpatialTranscriptomicsResearch / std-nb
  Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018
  ☆22Updated 6 years ago
• nghiavtr / SCmut
  ☆33Updated 6 years ago
• lanagarmire / SSrGE
  ☆34Updated 6 years ago
• wenweixiong / MARVEL
  ☆51Updated last year
• mardzix / bcd_nano_CUTnTag
  ☆12Updated last year
• kjgaulton / pipelines
  Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data
  ☆27Updated 4 years ago
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• SchulzLab / STARE
  TF analysis from epigenetic and Hi-C data
  ☆18Updated 5 months ago
• cbg-ethz / SCICoNE
  Single-cell copy number calling and event history reconstruction.
  ☆27Updated 9 months ago
• tanlabcode / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆24Updated last year
• annalam / cfdna-wgs-manuscript-code
  Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"
  ☆14Updated last year
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆13Updated 2 years ago
• mcvickerlab / varCA
  Use an ensemble of variant callers to call variants from ATAC-seq data
  ☆23Updated 4 months ago
• cxzhu / Paired-seq
  Paired-seq
  ☆14Updated last year
• gxiaolab / scAllele
  ☆38Updated 3 weeks ago
• buenrostrolab / dscATAC_analysis_code
  Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"
  ☆11Updated 5 years ago
• QuKunLab / APEC
  Single cell epigenomic clustering based on accessibility pattern
  ☆23Updated 2 years ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆14Updated 3 years ago
• p4rkerw / Muto_Wilson_NComm_2020
  Workflow for analysis of healthy human kidney by snRNAseq and snATACseq
  ☆25Updated 2 years ago
• navinlabcode / copykit
  Toolkit for single-cell copy number analysis
  ☆24Updated 2 months ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆44Updated 4 years ago
• inmybrain / SClineager
  SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers
  ☆10Updated last year
• KChen-lab / MEDALT
  Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile
  ☆21Updated 2 years ago
• Castelo-Branco-lab / scCut-Tag_2020
  Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)
  ☆13Updated 4 years ago