Alternatives and similar repositories for SCYN

Users that are interested in SCYN are comparing it to the libraries listed below

• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆22Updated last year
• tanlabcode / scATAC-pro
  A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
  ☆24Updated last year
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• buenrostrolab / dscATAC_analysis_code
  Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"
  ☆11Updated 6 years ago
• wenweixiong / MARVEL
  ☆51Updated last year
• UPSUTER / GEMLI
  ☆32Updated 10 months ago
• LKremer / scbs
  Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…
  ☆12Updated last year
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆17Updated 6 years ago
• annalam / cfdna-wgs-manuscript-code
  Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"
  ☆14Updated last year
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆25Updated 2 months ago
• UCSF-DSOS / bulk_RNA_seq
  RNA seq analysis using Bioconductor (analysis built on limma, edgeR)
  ☆12Updated 3 years ago
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• SchulzLab / STARE
  TF analysis from epigenetic and Hi-C data
  ☆18Updated 7 months ago
• weng-lab / BENGI
  ☆18Updated 3 years ago
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆13Updated 2 years ago
• lanagarmire / SSrGE
  ☆34Updated 6 years ago
• gambalab / gficf
  An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  ☆18Updated 2 years ago
• cbg-ethz / SCICoNE
  Single-cell copy number calling and event history reconstruction.
  ☆27Updated 11 months ago
• navinlabcode / copykit
  Toolkit for single-cell copy number analysis
  ☆24Updated 4 months ago
• p4rkerw / Muto_Wilson_NComm_2020
  Workflow for analysis of healthy human kidney by snRNAseq and snATACseq
  ☆25Updated 2 years ago
• harbourlab / PieParty
  represent each cell in UMAP plots as a pie chart
  ☆16Updated 4 years ago
• JunyueC / sci-fate_analysis
  Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)
  ☆24Updated 5 years ago
• QuKunLab / APEC
  Single cell epigenomic clustering based on accessibility pattern
  ☆23Updated 3 years ago
• gxiaolab / scAllele
  ☆39Updated 3 months ago
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆25Updated last year
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆25Updated 2 years ago
• bjstewart1 / kidney_sc_immune
  Repository for scRNAseq study of human kidneys
  ☆15Updated 6 years ago
• HYsxe / PRINT
  ☆37Updated last year
• veltenlab / rnamagnet
  ☆25Updated 3 months ago
• Henikoff / scCUT-Tag
  ☆17Updated 2 years ago