Lotfollahi-lab / nichecompass-reproducibilityLinks
Reproducible analyses for the NicheCompass manuscript
☆13Updated 6 months ago
Alternatives and similar repositories for nichecompass-reproducibility
Users that are interested in nichecompass-reproducibility are comparing it to the libraries listed below
Sorting:
- ☆15Updated 6 months ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆76Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆107Updated this week
- End-to-end analysis of spatial multi-omics data☆101Updated 2 months ago
- ☆52Updated 3 months ago
- domain adaptation of spatial and single-cell transcriptome☆28Updated last year
- Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping☆13Updated this week
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆26Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆40Updated last year
- ☆60Updated last year
- An offical repo for paper "Single-cells are Spatial Tokens: Transformers for Spatially Resolved Transcriptomics Data Imputation"☆18Updated 2 years ago
- Code used to benchmark Xenium☆73Updated last year
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆25Updated 10 months ago
- ☆121Updated 10 months ago
- ☆60Updated last year
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆64Updated last year
- Spatial-Linked Alignment Tool☆90Updated last year
- ☆42Updated last year
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆72Updated last month
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆76Updated last year
- Reproducing the experiments of the DestVI paper☆22Updated 3 years ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆27Updated last year
- Detect hierarchical structures in cell-cell communications☆16Updated 11 months ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆50Updated last year
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Updated 9 months ago
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆42Updated 2 months ago
- Identify spatial domain☆87Updated 7 months ago
- ☆13Updated 2 years ago
- ☆32Updated 10 months ago
- ☆17Updated 9 months ago