Whole mouse brain snATAC seq analysis
☆29Apr 18, 2025Updated last year
Alternatives and similar repositories for CEMBA_wmb_snATAC
Users that are interested in CEMBA_wmb_snATAC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆30Jul 25, 2024Updated 2 years ago
- ☆27Apr 15, 2025Updated last year
- ☆10Dec 11, 2024Updated last year
- Parse ArchR arrow files to anndata h5ad☆17Dec 14, 2023Updated 2 years ago
- ☆21Dec 15, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code repository for single-cell atlas of Alzheimer's disease progression across brain regions☆42Apr 23, 2024Updated 2 years ago
- iterative clustering pipeline of big single cell datasets.☆41Sep 5, 2025Updated last year
- Genearlized mapping scripts for RNA-seq and Patch-seq data☆19Sep 29, 2025Updated last year
- Single-cell epigenomics analysis tools☆329Sep 12, 2026Updated last month
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆44Jul 20, 2025Updated last year
- ☆13Jan 23, 2024Updated 2 years ago
- A Julia package for fitting VAEs to single-cell data using count distributions.☆26Feb 16, 2026Updated 8 months ago
- Scripts for analyzing ATAC-STARR data.☆10Feb 5, 2024Updated 2 years ago
- ☆16Oct 24, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Mapping pipeline for snmC-seq based technologies.☆20Sep 25, 2023Updated 3 years ago
- ☆22Aug 4, 2024Updated 2 years ago
- ☆21May 6, 2025Updated last year
- scATAC-seq data analysis tools and papers☆133Jul 1, 2025Updated last year
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆19Sep 25, 2026Updated last month
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Feb 7, 2022Updated 4 years ago
- scPred package for cell type prediction from scRNA-seq data☆107Jan 18, 2024Updated 2 years ago
- A database of useful gene signatures for single-cell analysis☆30May 19, 2025Updated last year
- Identification and targeting of treatment resistant progenitor populations in T-cell Acute Lymphoblastic Leukemia☆15May 16, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Code to reproduce analyses and figures for Kamath et al., 2022☆13May 5, 2022Updated 4 years ago
- This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.☆17Sep 24, 2024Updated 2 years ago
- ATAC-seq and scATAC-seq module developed by the University of Nebraska Medical Center☆10Jun 6, 2025Updated last year
- RA Synovial Single-cell Multimodal Cell Atlas☆22Mar 6, 2024Updated 2 years ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆245Mar 2, 2026Updated 8 months ago
- ☆37Oct 4, 2024Updated 2 years ago
- ☆12Aug 6, 2024Updated 2 years ago
- ☆13Feb 2, 2026Updated 9 months ago
- An statistical approach leveraging segments of distinct ancestries within individuals to estimate similarity in underlying causal effect …☆13Sep 27, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Use hodge decomposition for trajectory analysis☆26May 11, 2026Updated 5 months ago
- ☆15Sep 27, 2022Updated 4 years ago
- ☆62Mar 18, 2026Updated 7 months ago
- Codes for generating stlearn figures☆11May 22, 2023Updated 3 years ago
- Finding CpG islands in genome sequences☆13Jul 26, 2017Updated 9 years ago
- Raw data and analysis of scRNA Seq experiments for the paper Multimodal Mapping of the Immune Landscape in Human Pancreatic Cancer. This …☆17Nov 30, 2020Updated 5 years ago
- ☆11Jan 29, 2025Updated last year