mahmoodlab / MAPSLinks
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
☆63Updated last year
Alternatives and similar repositories for MAPS
Users that are interested in MAPS are comparing it to the libraries listed below
Sorting:
- Accessible and interoperable whole slide image analysis☆171Updated 2 weeks ago
- ☆25Updated 8 months ago
- ☆154Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- Her2 Breast Cancer Project☆90Updated 3 years ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- ☆35Updated last week
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆32Updated 8 months ago
- Integrated pipeline for multiplexed image analysis☆100Updated last week
- ☆56Updated 3 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- ☆67Updated 10 months ago
- ☆51Updated 3 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 3 weeks ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆37Updated 3 years ago
- ☆16Updated last month
- Deep learning on histopathology images.☆136Updated 4 years ago
- ☆59Updated 10 months ago
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆44Updated 6 months ago
- An introduction to deepcell and deep learning☆155Updated last year
- A visual–omics foundation model to bridge histopathology with spatial transcriptomics☆115Updated 6 months ago
- DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images☆62Updated 2 months ago
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆82Updated last year
- Feature extraction from GEOJson nuclei and tissue segmentation maps☆16Updated 6 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆88Updated 2 weeks ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆77Updated 5 years ago
- Train a model to predict gene expression from histology slides.☆109Updated 3 years ago
- ☆36Updated 2 years ago
- ☆70Updated 2 years ago
- Multiple-choice microscopy pipeline☆144Updated last month