Alternatives and similar repositories for MESA

Users that are interested in MESA are comparing it to the libraries listed below

• sggao / celllens
  CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data
  ☆29Updated 2 months ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆24Updated last year
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆38Updated this week
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆40Updated 7 months ago
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆31Updated last month
• wanglab-broad / CAST
  CAST package
  ☆40Updated 11 months ago
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆83Updated 2 months ago
• scverse / spatialdata-io
  ☆72Updated this week
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆44Updated last week
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆29Updated 2 months ago
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆88Updated last year
• scverse / spatialdata-notebooks
  ☆59Updated last week
• dpeerlab / ENVI
  ☆50Updated 4 months ago
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆28Updated last year
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆21Updated 8 months ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆30Updated 10 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆61Updated last month
• prabhakarlab / Banksy_py
  ☆64Updated 2 months ago
• shuxiaoc / maxfuse
  ☆55Updated last year
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆99Updated 3 months ago
• haniffalab / webatlas-pipeline
  A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
  ☆65Updated 3 months ago
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆35Updated this week
• Sanofi-Public / spatialone-pipeline
  Spatial One
  ☆28Updated 11 months ago
• yuqiyuqitan / SPACEc
  ☆49Updated 3 months ago
• jranek / quiche
  Differential spatial enrichment across conditions
  ☆20Updated this week
• camlab-bioml / starling
  Segmentation error aware clustering for multiplexed imaging
  ☆18Updated 8 months ago
• theislab / graphcompass
  GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems
  ☆38Updated 2 months ago
• PMBio / SpatialDE
  Test genes for Spatial Variation
  ☆14Updated 9 months ago
• 10XGenomics / janesick_nature_comms_2023_companion
  Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…
  ☆26Updated last year
• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆15Updated 2 years ago