saeyslab / NicheNet_LiverCellAtlasLinks
Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022
☆10Updated 3 years ago
Alternatives and similar repositories for NicheNet_LiverCellAtlas
Users that are interested in NicheNet_LiverCellAtlas are comparing it to the libraries listed below
Sorting:
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 10 months ago
- ☆62Updated 6 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆30Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 6 months ago
- R package for Protein activity analysis of single-cell RNAseq.☆84Updated 2 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆110Updated 6 months ago
- Methods for decontamination of single cell data☆49Updated 8 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆64Updated 4 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 4 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆64Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last week
- SCDC☆45Updated 4 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 3 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆65Updated 11 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆43Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆42Updated 3 weeks ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆23Updated last year
- An R framework for choosing clustering parameters in scRNA-seq analysis pipelines☆36Updated 5 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆79Updated 3 months ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆34Updated 11 months ago
- ☆24Updated 2 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- Single-Cell Inference of Class Switch Recombination☆19Updated last month
- ☆47Updated 3 years ago