saeyslab / NicheNet_LiverCellAtlasLinks
Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022
☆10Updated 4 years ago
Alternatives and similar repositories for NicheNet_LiverCellAtlas
Users that are interested in NicheNet_LiverCellAtlas are comparing it to the libraries listed below
Sorting:
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆68Updated last year
- ☆64Updated 6 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 8 months ago
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆85Updated 3 years ago
- Methods for decontamination of single cell data☆54Updated 10 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆36Updated 2 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆114Updated 8 months ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Updated 3 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆53Updated last year
- ☆41Updated 4 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last month
- R Package for Single-Cell Dataset Processing and Visualization☆65Updated 4 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆30Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆45Updated 2 years ago
- ☆48Updated 3 years ago
- Single-Cell Inference of Class Switch Recombination☆20Updated 2 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated last week
- Coarse-graining of large single-cell RNA-seq data into metacells☆91Updated 3 weeks ago
- Accurate and fast cell marker gene identification with COSG☆62Updated 3 years ago
- SCDC☆45Updated 6 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated 2 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆85Updated 2 years ago
- An R framework for choosing clustering parameters in scRNA-seq analysis pipelines☆36Updated 5 years ago