saeyslab / NicheNet_LiverCellAtlasLinks
Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022
☆10Updated 4 years ago
Alternatives and similar repositories for NicheNet_LiverCellAtlas
Users that are interested in NicheNet_LiverCellAtlas are comparing it to the libraries listed below
Sorting:
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆46Updated 2 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆49Updated 9 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆68Updated last year
- Methods for decontamination of single cell data☆56Updated 11 months ago
- detecting spatial patterns of allele-specific expression☆11Updated last year
- SCDC☆46Updated 7 months ago
- ☆65Updated 6 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆36Updated 2 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆66Updated 4 years ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆65Updated 3 years ago
- ☆48Updated 3 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- ☆50Updated 6 years ago
- R package for Protein activity analysis of single-cell RNAseq.☆87Updated 3 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆30Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Updated this week
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆34Updated 5 years ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆22Updated 2 years ago
- A R package for advanced single cell data viz☆73Updated 5 months ago
- Draw phylogenetic trees of tumor evolution☆87Updated 2 years ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆23Updated 2 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆54Updated last year
- ☆41Updated 4 years ago
- ☆12Updated 6 months ago