czbiohub-sf / tabula-sapiensLinks
Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
☆42Updated 2 months ago
Alternatives and similar repositories for tabula-sapiens
Users that are interested in tabula-sapiens are comparing it to the libraries listed below
Sorting:
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 4 months ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- Functional Inference of Gene Regulation☆48Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆55Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated 2 weeks ago
- scWGCNA☆61Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆65Updated 3 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 6 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 3 months ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆24Updated 3 years ago
- ☆61Updated 4 years ago
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 4 years ago
- ☆31Updated 7 months ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- ☆32Updated 9 months ago
- Using TCR and expression for sequence embedding☆59Updated 2 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆77Updated 6 months ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆69Updated last month
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- ☆37Updated 7 months ago
- Single cell omics biology annotations☆51Updated 6 months ago
- ☆43Updated 4 months ago
- Benchmark of GRNs using the GRETA pipeline☆28Updated last week
- A repository of pipelines for single-cell data in Nextflow DSL2☆76Updated 2 years ago
- Pan-Cancer Single Cell Classifier☆82Updated last year