statOmics / tradeSeqLinks
TRAjectory-based Differential Expression analysis for SEQuencing data
☆279Updated 2 months ago
Alternatives and similar repositories for tradeSeq
Users that are interested in tradeSeq are comparing it to the libraries listed below
Sorting:
- R package implementation of Milo for testing for differential abundance in KNN graphs☆391Updated 2 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆231Updated 3 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆304Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆197Updated 3 months ago
- Clone of the Bioconductor repository for the SingleR package.☆193Updated last month
- Interpretation of cell states using reference single-cell maps☆289Updated 2 weeks ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆291Updated 2 years ago
- Gene set variation analysis☆223Updated 4 months ago
- Interactively analyze single cell genomic data☆182Updated last month
- Fast Wilcoxon and auROC☆187Updated 9 months ago
- Tools and methods for analysis of single cell assay data in R☆249Updated last year
- Methods for detecting doublets in single-cell sequencing data☆205Updated 2 weeks ago
- R package to infer biological activities from omics data using a collection of methods.☆261Updated 5 months ago
- A toolkit for single-cell immune profiling☆345Updated 2 weeks ago
- Easy single cell analysis platform for enrichment☆186Updated last week
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆234Updated last week
- Simple simulation of single-cell RNA sequencing data☆230Updated 2 weeks ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆204Updated 11 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆269Updated this week
- R package for integrating and analyzing multiple single-cell datasets☆418Updated last month
- Shiny Interactive Web Apps for Single-Cell Data☆193Updated 4 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆205Updated 2 weeks ago
- Multi-subject Single Cell Deconvolution☆268Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆213Updated last year
- Interfaces for HDF5-based Single Cell File Formats☆167Updated last year
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆292Updated last month
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆231Updated 2 years ago
- Dataset distribution for Seurat☆143Updated 5 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆213Updated last year
- Cell types enrichment analysis☆198Updated last year