TRAjectory-based Differential Expression analysis for SEQuencing data
☆310Jun 17, 2025Updated last year
Alternatives and similar repositories for tradeSeq
Users that are interested in tradeSeq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆346Apr 23, 2024Updated 2 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆446Aug 25, 2026Updated last week
- Methods for detecting doublets in single-cell sequencing data☆263Updated this week
- Multi-sample multi-group scRNA-seq analysis tools☆240Jul 6, 2026Updated last month
- AUCell: score single cells with gene regulatory networks☆202Mar 9, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆341Nov 1, 2022Updated 3 years ago
- R package to infer biological activities from omics data using a collection of methods.☆304Dec 16, 2025Updated 8 months ago
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 8 months ago
- R package for integrating and analyzing multiple single-cell datasets☆432Aug 18, 2026Updated 2 weeks ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆267Jan 10, 2026Updated 7 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆230Jul 2, 2026Updated 2 months ago
- Clone of the Bioconductor repository for the SingleR package.☆204Updated this week
- Gene set variation analysis☆247Aug 4, 2026Updated 3 weeks ago
- Easy single cell analysis platform for enrichment☆231Aug 9, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- High dimensional weighted gene co-expression network analysis☆492Jun 16, 2026Updated 2 months ago
- CellRank: dynamics from multi-view single-cell data☆456Updated this week
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆127Apr 16, 2025Updated last year
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 8 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆247Aug 7, 2024Updated 2 years ago
- Spatial omics analysis toolbox☆389Updated this week
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 6 months ago
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆794Jan 6, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A toolkit for single-cell immune profiling☆374Aug 14, 2026Updated 2 weeks ago
- ☆74May 28, 2025Updated last year
- R client for the OmniPath web service☆173Aug 3, 2026Updated last month
- Conversion between scRNA-seq objects☆209May 5, 2026Updated 3 months ago
- NicheNet: predict active ligand-target links between interacting cells☆674Jun 1, 2026Updated 3 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆311Jun 30, 2026Updated 2 months ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57Jun 29, 2026Updated 2 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆561Mar 21, 2025Updated last year
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆347Jul 28, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package for single cell and other data analysis using diffusion maps☆110Jul 22, 2026Updated last month
- Automated, probabilistic assignment of cell types in scRNA-seq data☆215Jan 9, 2023Updated 3 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆549Aug 3, 2026Updated 3 weeks ago
- Toolkit for Single-Cell Velocity☆61Apr 17, 2026Updated 4 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆245Mar 2, 2026Updated 6 months ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆155Jun 26, 2026Updated 2 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆670Jun 5, 2026Updated 2 months ago