statOmics / tradeSeqLinks
TRAjectory-based Differential Expression analysis for SEQuencing data
☆269Updated 3 weeks ago
Alternatives and similar repositories for tradeSeq
Users that are interested in tradeSeq are comparing it to the libraries listed below
Sorting:
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆298Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆194Updated 2 months ago
- Tools and methods for analysis of single cell assay data in R☆243Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆386Updated last month
- Interactively analyze single cell genomic data☆182Updated last week
- Fast Wilcoxon and auROC☆186Updated 8 months ago
- Interpretation of cell states using reference single-cell maps☆281Updated last month
- Clone of the Bioconductor repository for the SingleR package.☆191Updated last month
- Simple simulation of single-cell RNA sequencing data☆228Updated this week
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆225Updated 2 months ago
- Multi-subject Single Cell Deconvolution☆263Updated last year
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆197Updated 9 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆284Updated 2 years ago
- Interfaces for HDF5-based Single Cell File Formats☆165Updated last year
- R package to infer biological activities from omics data using a collection of methods.☆260Updated 4 months ago
- Gene set variation analysis☆221Updated 2 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆264Updated this week
- Easy single cell analysis platform for enrichment☆184Updated last month
- Methods for detecting doublets in single-cell sequencing data☆201Updated 3 months ago
- R package for integrating and analyzing multiple single-cell datasets☆417Updated 2 months ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆229Updated 2 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆232Updated last year
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆290Updated 3 weeks ago
- Cell types enrichment analysis☆198Updated last year
- Dataset distribution for Seurat☆142Updated 4 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆211Updated 11 months ago
- Conversion between scRNA-seq objects☆178Updated 3 weeks ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆199Updated last month
- Community-provided extensions to Seurat☆340Updated 7 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆213Updated last year