rikenbit / scTensorLinks
R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
☆34Updated 4 months ago
Alternatives and similar repositories for scTensor
Users that are interested in scTensor are comparing it to the libraries listed below
Sorting:
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- ☆50Updated 5 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 3 months ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated last month
- R package for Bioconductor submission☆37Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 5 months ago
- ☆41Updated 4 years ago
- R package for specialised analysis of single cell data☆39Updated 3 years ago
- Clone of the Bioconductor repository for the scran package.☆44Updated last year
- Cell-cell communication and lineage inference for scRNA-seq data☆24Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆34Updated 11 months ago
- ☆58Updated 2 months ago
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…☆17Updated 10 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆43Updated last year
- Cell type pipes for R☆52Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- analysis script for GBM single cell RNA seq data☆22Updated 4 years ago
- ☆94Updated last month
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 5 months ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆34Updated 4 years ago
- SCDC☆45Updated 4 months ago
- A database of useful gene signatures for single-cell analysis☆27Updated 5 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆31Updated 2 years ago
- Single-cell analysis with non-negative matrix factorization☆45Updated 3 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago