rikenbit / scTensorLinks
R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
☆34Updated 2 months ago
Alternatives and similar repositories for scTensor
Users that are interested in scTensor are comparing it to the libraries listed below
Sorting:
- R package for Bioconductor submission☆37Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆50Updated 5 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆88Updated 2 months ago
- Cell-cell communication and lineage inference for scRNA-seq data☆24Updated 2 years ago
- R package for specialised analysis of single cell data☆39Updated 2 years ago
- ☆41Updated 4 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 4 months ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆31Updated 2 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆42Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 3 years ago
- ☆56Updated 3 weeks ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated last week
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆42Updated 3 years ago
- ☆42Updated 4 years ago
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…☆17Updated 9 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 9 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- SCDC☆45Updated 2 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆32Updated 9 months ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆35Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated last month
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆36Updated 2 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year