dtsoucas / DWLSLinks
Gene expression deconvolution using dampened weighted least squares
☆33Updated 5 years ago
Alternatives and similar repositories for DWLS
Users that are interested in DWLS are comparing it to the libraries listed below
Sorting:
- Methods to compute Local Inverse Simpson's Index (LISI)☆73Updated 4 years ago
- Analysis of cell-cell communication at single-cell resolution☆106Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆85Updated 10 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆81Updated last year
- Metacells - Single-cell RNA Sequencing Analysis☆117Updated last year
- R package for semi-supervised single-cell data integration☆95Updated last week
- ☆129Updated 3 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆63Updated last year
- ☆59Updated 5 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆35Updated 3 weeks ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆127Updated 2 months ago
- Spatial Cellular Estimator for Tumors☆60Updated last month
- ☆60Updated last month
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆88Updated 3 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 3 months ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆81Updated 11 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆98Updated 8 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 8 months ago
- Metacell - Single-cell mRNA Analysis☆120Updated last year
- Functional Inference of Gene Regulation☆51Updated last year
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆40Updated 4 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 5 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆82Updated 9 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Updated last week
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- Single Cell Cluster Evaluation☆99Updated 4 years ago
- ☆36Updated 3 months ago
- R implementation of GeneTrajectory☆68Updated last year