Gene expression deconvolution using dampened weighted least squares
☆33Feb 4, 2021Updated 5 years ago
Alternatives and similar repositories for DWLS
Users that are interested in DWLS are comparing it to the libraries listed below
Sorting:
- List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures☆18Aug 28, 2020Updated 5 years ago
- A library for the deconvolution of bulk cell samples using single-cell RNA expression data.☆23Nov 3, 2021Updated 4 years ago
- Experiments to run single cell analyses efficiently at scale using Zarr, anndata, Scanpy, and Apache Spark☆15Mar 28, 2019Updated 6 years ago
- ☆16Jun 17, 2021Updated 4 years ago
- reorganize paper of deconvolution method☆11Dec 14, 2023Updated 2 years ago
- ☆13Jun 6, 2024Updated last year
- Structure learning based for zero-inflated negative binomial data☆10Jul 11, 2024Updated last year
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆22Sep 16, 2019Updated 6 years ago
- digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data☆15Oct 31, 2024Updated last year
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- Deep Learning based cell composition analysis with Scaden.☆88Nov 5, 2024Updated last year
- ☆33May 19, 2025Updated 10 months ago
- Imputing dropout events in single-cell RNA-sequencing data☆18Dec 7, 2020Updated 5 years ago
- Profile purification of single-cell spatial transcriptomics data☆30Nov 13, 2025Updated 4 months ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆24Aug 15, 2023Updated 2 years ago
- SCDC☆46Jun 20, 2025Updated 9 months ago
- Repository for Cibersortx☆62Mar 18, 2021Updated 5 years ago
- Unified access to several second-generation deconvolution methods☆96Jan 5, 2026Updated 2 months ago
- Code of structural entropy minimisation for TAD identification of Hic matrix☆13Sep 15, 2019Updated 6 years ago
- Annotate 2D point clouds using overlay polygons☆15Jun 19, 2025Updated 9 months ago
- ☆16May 21, 2024Updated last year
- Gene set scoring for single-cell data☆185Feb 11, 2026Updated last month
- ☆12Jul 30, 2022Updated 3 years ago
- ☆59Nov 21, 2020Updated 5 years ago
- SPROD: Spatial expression profiling de-noising☆36Jun 14, 2023Updated 2 years ago
- ☆12Jan 27, 2022Updated 4 years ago
- Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data☆30Feb 20, 2024Updated 2 years ago
- ☆15Oct 19, 2023Updated 2 years ago
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆25Sep 23, 2024Updated last year
- Robust and scalable inference of cell lineages via consensus clustering. Features novel algorithms for the comparison of weighted graphs …☆14Jan 16, 2017Updated 9 years ago
- Multi-subject Single Cell Deconvolution☆288Mar 4, 2024Updated 2 years ago
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆12Feb 6, 2026Updated last month
- This repo is not maintained anymore, please refer to: https://github.com/rnacentre/BrainCellAtlas_reproducibility.☆19Sep 24, 2024Updated last year
- A database of useful gene signatures for single-cell analysis☆28May 19, 2025Updated 10 months ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis☆19Apr 23, 2025Updated 11 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆169Jan 8, 2026Updated 2 months ago
- ☆18Jun 13, 2019Updated 6 years ago
- repo to explore spatial data in R/Bioconductor and Python☆12Dec 3, 2019Updated 6 years ago