dtsoucas / DWLSLinks
Gene expression deconvolution using dampened weighted least squares
☆32Updated 4 years ago
Alternatives and similar repositories for DWLS
Users that are interested in DWLS are comparing it to the libraries listed below
Sorting:
- ☆126Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆72Updated 4 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆86Updated 3 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated last month
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated 2 weeks ago
- R package for semi-supervised single-cell data integration☆91Updated 4 months ago
- ☆59Updated 5 years ago
- Metacells - Single-cell RNA Sequencing Analysis☆116Updated last year
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 4 months ago
- ☆59Updated last week
- Context specific and dynamic gene regulatory network reconstruction and analysis☆124Updated 3 weeks ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆81Updated 8 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆79Updated 7 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- ☆59Updated last year
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated last year
- Spatial Cellular Estimator for Tumors☆60Updated this week
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 3 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆77Updated 9 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆78Updated 3 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 10 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Draw phylogenetic trees of tumor evolution☆86Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated 2 months ago