satijalab / azimuth-references
☆21Updated 4 months ago
Alternatives and similar repositories for azimuth-references:
Users that are interested in azimuth-references are comparing it to the libraries listed below
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- ☆29Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆16Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 4 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- ☆35Updated 2 weeks ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- ☆25Updated 3 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 8 months ago
- ☆38Updated 4 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆41Updated 3 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 5 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- ☆30Updated last month
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- ☆22Updated 2 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 9 months ago
- Clone identification from single-cell data☆61Updated 2 years ago
- An r package that works as a wrapper to homologene☆43Updated last year