satijalab / azimuth-references
☆20Updated 2 months ago
Alternatives and similar repositories for azimuth-references:
Users that are interested in azimuth-references are comparing it to the libraries listed below
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆34Updated 3 years ago
- ☆29Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 2 months ago
- ConsensusTME Gene Sets and R Script☆39Updated 7 months ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Cluster Identity Predictor (R package implementation)☆19Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- ☆38Updated 4 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 6 months ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Clone identification from single-cell data☆60Updated 2 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated 2 years ago
- An r package that works as a wrapper to homologene☆42Updated last year
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆21Updated 4 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 10 months ago
- Standalone shiny server container for viewing CellChat object☆12Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆39Updated 3 years ago
- ☆12Updated 8 months ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Single-cell Case Control Analysis☆48Updated 2 months ago
- Exon-Intron Split Analysis (EISA) in R☆15Updated last week