☆26May 16, 2025Updated last year
Alternatives and similar repositories for azimuth-references
Users that are interested in azimuth-references are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Shiny web app for mapping datasets using Seurat v4☆146May 22, 2026Updated 3 weeks ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆22May 27, 2026Updated 3 weeks ago
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆16Mar 3, 2026Updated 3 months ago
- Cluster Identity Predictor (R package implementation)☆21Mar 8, 2022Updated 4 years ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆18May 19, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Collection of cell type reference datasets.☆67May 31, 2024Updated 2 years ago
- Code for producing the analysis in the "Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq" manuscr…☆16Feb 5, 2020Updated 6 years ago
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆42Nov 18, 2021Updated 4 years ago
- ☆17May 22, 2025Updated last year
- Advanced steps of the OSCA book☆14Apr 27, 2026Updated last month
- ☆14Mar 20, 2021Updated 5 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Nov 16, 2021Updated 4 years ago
- Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data☆22Jul 19, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- 10x snRNA-seq study on 5 postmortem human brain regions across the reward circuitry: NAc, AMY, sACC, DLPFC, and HPC☆25Mar 26, 2026Updated 2 months ago
- Python library for plotting Cellphonedb results. Ported from ktplots R package.☆57May 29, 2026Updated 3 weeks ago
- Six hour hands-on to creating publication-quality plots in R☆43Mar 20, 2026Updated 2 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆302May 11, 2026Updated last month
- A tidyverse suite for (pre-) machine-learning: cluster, PCA, permute, impute, rotate, redundancy, triangular, smart-subset, abundant and …☆32Jul 25, 2023Updated 2 years ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 5 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 5 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆266Jan 10, 2026Updated 5 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- An R package designed to demultiplex cell hashing data☆32Jun 10, 2026Updated last week
- Methods for detecting doublets in single-cell sequencing data☆253Jun 12, 2026Updated last week
- Community-provided extensions to Seurat☆365Feb 17, 2026Updated 4 months ago
- Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq".☆11Jul 5, 2018Updated 7 years ago
- Sanger Cellular Genetics single-cell ATAC-seq pipeline.☆13Aug 25, 2023Updated 2 years ago
- ☆31May 19, 2026Updated 3 weeks ago
- Examples of kallisto + sleuth☆11May 18, 2017Updated 9 years ago
- ☆17Jun 12, 2026Updated last week
- LIANA: a LIgand-receptor ANalysis frAmework☆242Aug 7, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- Calibrated clustering via knockoffs for single-cell genomics☆11Feb 13, 2025Updated last year
- Framework for sensitive DE testing (using neighbourhoods)☆78Nov 11, 2025Updated 7 months ago
- R package for the analysis of single-cell immune repertoires☆45Feb 7, 2025Updated last year
- Spatial Image Analysis of Tissues☆15Dec 8, 2022Updated 3 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31May 8, 2018Updated 8 years ago
- ☆30Apr 5, 2025Updated last year