lanagarmire / Granatum
☆20Updated 5 years ago
Alternatives and similar repositories for Granatum:
Users that are interested in Granatum are comparing it to the libraries listed below
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- 10x single cell RNA-seq data from the developing mouse retina☆16Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- RAGE-seq scripts☆18Updated 3 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 3 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆19Updated 6 years ago
- ☆40Updated 6 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆42Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- epigenome analysis to rank transcription factors☆30Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆43Updated last year
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- ☆36Updated 2 years ago
- A snakemake pipeline for 10X genomics cellranger☆19Updated last month
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Updated 4 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 5 months ago
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆35Updated 6 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- documentation for trackViewer☆29Updated 5 years ago