greenelab / miQC
Flexible, probablistic metrics for quality control of scRNA-seq data
☆19Updated 2 years ago
Alternatives and similar repositories for miQC:
Users that are interested in miQC are comparing it to the libraries listed below
- Cluster Identity Predictor (R package implementation)☆19Updated 2 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆14Updated last year
- Collection of useful methods for single cell analysis☆14Updated 5 months ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- Code used for muti cellular factor analysis☆12Updated last year
- Hierarchical classification of cells☆23Updated 6 months ago
- ☆29Updated last year
- ☆20Updated 3 months ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 7 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- An analytics package for single cell data☆21Updated 2 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆14Updated 4 months ago
- R API and htmlwidget for Vitessce☆39Updated 4 months ago
- ☆38Updated 4 years ago
- R package for Flexible dot plots☆29Updated 2 years ago
- ☆12Updated 9 months ago
- ☆16Updated 3 months ago
- Calculation of distance metrics for matrices☆25Updated 5 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆29Updated 2 weeks ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- distinct: a method for differential analyses via hierarchical permutation tests☆11Updated last year