greenelab / miQCLinks
Flexible, probablistic metrics for quality control of scRNA-seq data
☆21Updated 2 years ago
Alternatives and similar repositories for miQC
Users that are interested in miQC are comparing it to the libraries listed below
Sorting:
- Single-cell analysis with non-negative matrix factorization☆45Updated last month
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- ☆25Updated 3 years ago
- An R package for visualising cell-cell interactions☆44Updated last year
- ☆24Updated 3 months ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- R API and htmlwidget for Vitessce☆42Updated last week
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Extension of SpatialExperiment with sf☆55Updated last week
- Calculation of distance metrics for matrices☆25Updated 6 years ago
- Code used for muti cellular factor analysis☆14Updated last year
- Toolkit for Single-Cell Velocity☆58Updated last month
- R package for Bioconductor submission☆37Updated 2 years ago
- Cell type pipes for R☆51Updated last year
- ☆41Updated 4 years ago
- An analytics package for single cell data☆22Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- R package for benchmarking single cell analysis methods☆32Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated 3 weeks ago
- distinct: a method for differential analyses via hierarchical permutation tests☆11Updated last year
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Collection of useful methods for single cell analysis☆14Updated last year
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated 2 years ago
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆32Updated 3 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 10 months ago
- An R package designed to demultiplex cell hashing data☆31Updated 2 weeks ago
- An r package that works as a wrapper to homologene☆46Updated last year