Alternatives and similar repositories for miQC

Users that are interested in miQC are comparing it to the libraries listed below

• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆45Updated 3 months ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆39Updated 3 years ago
• pachterlab / SpatialFeatureExperiment
  Extension of SpatialExperiment with sf
  ☆55Updated last week
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 4 years ago
• hansenlab / tricycle
  ☆27Updated 3 years ago
• saezlab / MOFAcell
  Code used for muti cellular factor analysis
  ☆14Updated last year
• Sarah145 / CCPlotR
  An R package for visualising cell-cell interactions
  ☆43Updated last year
• BUStools / BUS_notebooks_R
  R vignettes for processing BUS format single-cell RNA-seq files
  ☆21Updated 5 years ago
• SCA-IRCM / SingleCellSignalR
  R package for Bioconductor submission
  ☆37Updated 2 years ago
• skinnider / dismay
  Calculation of distance metrics for matrices
  ☆26Updated 6 years ago
• GregorySchwartz / tooManyCellsR
  An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.
  ☆26Updated 5 years ago
• immunogenomics / singlecellmethods
  Collection of useful methods for single cell analysis
  ☆14Updated last year
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆58Updated 4 months ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆38Updated 3 years ago
• cancerbits / DElegate
  Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data
  ☆21Updated last year
• bioturing / signac
  An analytics package for single cell data
  ☆22Updated 3 years ago
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆20Updated 3 years ago
• shenorrLabTRDF / cellAlign
  ☆43Updated 4 years ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• SimoneTiberi / distinct
  distinct: a method for differential analyses via hierarchical permutation tests
  ☆11Updated last year
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 3 years ago
• BoevaLab / ANS_signature_scoring
  ANS_signature_scoring: A gene expression signature scoring Python package.
  ☆16Updated last month
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆46Updated 2 years ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆32Updated 2 years ago
• vitessce / vitessceR
  R API and htmlwidget for Vitessce
  ☆43Updated 3 months ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆39Updated 3 years ago
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 3 years ago
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆38Updated last week
• BimberLab / cellhashR
  An R package designed to demultiplex cell hashing data
  ☆31Updated last month
• mojaveazure / loomR
  An R-based interface for loom files
  ☆67Updated 5 years ago