greenelab / miQCLinks
Flexible, probablistic metrics for quality control of scRNA-seq data
☆21Updated 3 years ago
Alternatives and similar repositories for miQC
Users that are interested in miQC are comparing it to the libraries listed below
Sorting:
- Single-cell analysis with non-negative matrix factorization☆45Updated 5 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- ☆27Updated 3 years ago
- An R package for visualising cell-cell interactions☆45Updated last year
- ☆43Updated 5 years ago
- Human brain, >200,000 nuclei☆23Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆21Updated 3 years ago
- Extension of SpatialExperiment with sf☆56Updated this week
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated 2 years ago
- Cell type pipes for R☆52Updated last year
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Collection of useful methods for single cell analysis☆15Updated last year
- R API and htmlwidget for Vitessce☆43Updated 5 months ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 4 months ago
- R package for Bioconductor submission☆37Updated 3 years ago
- sharing interactive single cell gene expression visualizations from Seurat☆11Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated 2 years ago
- An analytics package for single cell data☆22Updated 3 years ago
- Code used for muti cellular factor analysis☆15Updated 2 years ago
- Toolkit for Single-Cell Velocity☆59Updated 6 months ago
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated 7 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆39Updated 3 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Updated 2 years ago
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- ☆29Updated 2 years ago
- An r package that works as a wrapper to homologene☆48Updated 2 years ago
- ☆31Updated 3 years ago
- R package for Flexible dot plots☆29Updated 3 years ago