greenelab / miQCLinks
Flexible, probablistic metrics for quality control of scRNA-seq data
☆20Updated 2 years ago
Alternatives and similar repositories for miQC
Users that are interested in miQC are comparing it to the libraries listed below
Sorting:
- ☆23Updated last month
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Single-cell Mutual Information-based Network Engineering Ranger☆17Updated 3 weeks ago
- Collection of useful methods for single cell analysis☆14Updated 10 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated last year
- ☆29Updated 2 years ago
- Code used for muti cellular factor analysis☆14Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last month
- distinct: a method for differential analyses via hierarchical permutation tests☆11Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- Single-cell analysis with non-negative matrix factorization☆44Updated 7 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 7 months ago
- ☆41Updated 4 years ago
- ☆16Updated 3 months ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated last week
- Hierarchical classification of cells☆23Updated 10 months ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- R package for computing Association Plots☆16Updated 7 months ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆15Updated 2 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated this week
- Automated ingestion and conversion of various single-cell data formats, within and across species☆12Updated 3 months ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- R API and htmlwidget for Vitessce☆40Updated 8 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- R package for gene selection using k-NN graphs.☆13Updated 2 years ago