greenelab / miQC
Flexible, probablistic metrics for quality control of scRNA-seq data
☆19Updated 2 years ago
Alternatives and similar repositories for miQC:
Users that are interested in miQC are comparing it to the libraries listed below
- Cluster Identity Predictor (R package implementation)☆19Updated 2 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆14Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- ☆29Updated last year
- ☆20Updated 2 months ago
- Collection of useful methods for single cell analysis☆14Updated 4 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Single-cell analysis with non-negative matrix factorization☆42Updated 2 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆34Updated 3 years ago
- An r package that works as a wrapper to homologene☆42Updated last year
- R package for computing Association Plots☆15Updated 2 months ago
- R package for Bioconductor submission☆31Updated 2 years ago
- R package for Flexible dot plots☆29Updated 2 years ago
- ☆24Updated 2 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆26Updated last month
- Toolkit for Single-Cell Velocity☆54Updated 2 weeks ago
- R package for gene selection using k-NN graphs.☆13Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago
- ☆12Updated 8 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Hierarchical classification of cells☆23Updated 5 months ago
- An R package for visualising cell-cell interactions☆43Updated 5 months ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- An analytics package for single cell data☆21Updated 2 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 4 years ago
- Calculation of distance metrics for matrices☆25Updated 5 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- Wrapper and helper functions to use bulk RNA-seq differential expression methods with single-cell data☆18Updated 11 months ago