MarioniLab / milo_analysis_2020
Code to reproduce analysis of Milo manuscript
☆12Updated 2 years ago
Alternatives and similar repositories for milo_analysis_2020:
Users that are interested in milo_analysis_2020 are comparing it to the libraries listed below
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 10 months ago
- ☆48Updated 5 months ago
- RNA velocity validation☆23Updated 2 years ago
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆47Updated 2 months ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆20Updated 2 years ago
- Hierarchical classification of cells☆23Updated 5 months ago
- ☆39Updated 3 years ago
- ☆28Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆29Updated last month
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆25Updated last year
- Parse ArchR arrow files to anndata h5ad☆14Updated last year
- Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.☆20Updated 4 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- ☆29Updated last year
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- ☆34Updated 8 months ago
- ☆12Updated 8 months ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆14Updated last year
- Identifying external communication signals using single-cell transcriptomics data☆19Updated 7 months ago
- ☆11Updated last month
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 3 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆26Updated last month
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated 2 months ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated 10 months ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆19Updated last year