MarioniLab / milo_analysis_2020Links
Code to reproduce analysis of Milo manuscript
☆12Updated 2 years ago
Alternatives and similar repositories for milo_analysis_2020
Users that are interested in milo_analysis_2020 are comparing it to the libraries listed below
Sorting:
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Hierarchical classification of cells☆23Updated 10 months ago
- RNA velocity validation☆22Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 8 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 3 weeks ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated last week
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆32Updated last year
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆32Updated last week
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆52Updated 3 weeks ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Querying cellular states and programs by learning representations of gene sets☆13Updated 11 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 months ago
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Single-cell Mutual Information-based Network Engineering Ranger☆17Updated 3 weeks ago
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆22Updated last month
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- ☆28Updated 3 years ago
- ☆29Updated 2 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆28Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 9 months ago
- ☆47Updated last year
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- ☆41Updated 4 years ago
- ☆41Updated 4 years ago
- ☆54Updated 11 months ago
- ☆18Updated 2 months ago
- Landscape Single Cell Entropy☆20Updated 4 years ago