bhuvad / SpaNormLinks
R package for normalisation of spatial transcriptomics data
☆15Updated 6 months ago
Alternatives and similar repositories for SpaNorm
Users that are interested in SpaNorm are comparing it to the libraries listed below
Sorting:
- Profile purification of single-cell spatial transcriptomics data☆26Updated last month
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆12Updated 2 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- Spatial One☆30Updated last year
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Updated 6 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated last month
- scTM: A package for topic modelling in transcriptomics data☆24Updated last year
- ☆31Updated 10 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated last month
- Multi-resolution Variational Inference☆22Updated 2 weeks ago
- ☆30Updated 7 months ago
- CAST package☆41Updated last year
- ☆34Updated 2 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆29Updated last year
- ☆17Updated last year
- ☆60Updated 3 months ago
- ☆13Updated 6 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆35Updated 7 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆34Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆44Updated 4 months ago
- SPATA Package for spatial gene expression analysis☆21Updated 3 years ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- ☆21Updated last week
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 3 months ago
- Spatial direct messaging detected by bivariate Moran☆32Updated 5 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆24Updated 3 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated 10 months ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆26Updated 2 years ago
- ☆13Updated 3 years ago