nolanlab / SpatialScoreLinks
R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in cutaneous T cell lymphoma".
☆14Updated 3 years ago
Alternatives and similar repositories for SpatialScore
Users that are interested in SpatialScore are comparing it to the libraries listed below
Sorting:
- An R package for handling and analysing imaging mass cytometry data☆26Updated this week
- Interoperability between SpatialData and the Xenium Explorer☆23Updated 10 months ago
- ☆27Updated 7 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 8 months ago
- Segmentation error aware clustering for multiplexed imaging☆18Updated 4 months ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated 2 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆35Updated last year
- SPATA Package for spatial gene expression analysis☆23Updated 3 years ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated 10 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆27Updated this week
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆11Updated last month
- Spatial One☆28Updated 7 months ago
- Identification of spatial homogeneous regions☆21Updated 4 months ago
- ☆19Updated 2 weeks ago
- Profile purification of single-cell spatial transcriptomics data☆10Updated 3 weeks ago
- CAST package☆38Updated 7 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆28Updated this week
- ☆22Updated 2 years ago
- An R package for performing cell typing in SMI and other single cell data☆37Updated last week
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 3 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆37Updated 6 months ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆38Updated last week
- Tools to handle IMC data☆23Updated 3 years ago
- R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients☆19Updated 3 weeks ago
- ☆27Updated 3 months ago
- Python package for reading imaging mass cytometry (IMC) files☆15Updated this week
- ☆52Updated 2 years ago
- ☆37Updated last year
- ☆18Updated last week
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated 2 weeks ago