Alternatives and similar repositories for SeCNV

Users that are interested in SeCNV are comparing it to the libraries listed below

• annalam / cfdna-wgs-manuscript-code
  Code used to generate the results in "Somatic chronology of treatment-resistant prostate cancer via deep whole-genome ctDNA sequencing"
  ☆15Updated last year
• BioThinkLab / SCYN
  ☆16Updated 3 years ago
• TheJacksonLaboratory / tcga_subtype_classification
  Detecting cancer subtypes with machine learning.
  ☆10Updated 5 years ago
• mingjingsi / FIRM
  Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets
  ☆13Updated 3 years ago
• LKremer / scbs
  Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…
  ☆12Updated last year
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• secrierlab / EMT
  This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
  ☆13Updated 2 years ago
• liulab-dfci / TRUST4_manuscript_evaluation
  TRUST4 manuscript evaluation
  ☆16Updated 3 years ago
• cxzhu / Paired-seq
  Paired-seq
  ☆14Updated last year
• Castelo-Branco-lab / scCut-Tag_2020
  Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)
  ☆13Updated 4 years ago
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆14Updated 3 years ago
• marrlab / CAR_T_TargetIdentification
  Computational identification of targets for CAR-T cell therapy in AML
  ☆21Updated 2 years ago
• tianshilu / QBRC-Somatic-Pipeline
  QBRC Somatic Mutation Calling Pipeline
  ☆16Updated 3 years ago
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated 2 years ago
• mckellardw / STRS
  Suite of analysis tools for spatial total RNA-sequencing
  ☆12Updated 2 years ago
• vincenthahaut / FLASH-Seq
  ☆10Updated 3 years ago
• aristoteleo / spateo-tutorials
  tutorials for spateo package
  ☆20Updated 11 months ago
• buenrostrolab / dscATAC_analysis_code
  Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"
  ☆11Updated 6 years ago
• AlexandrovLab / SigProfilerTopography
  SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…
  ☆22Updated 4 months ago
• navinlabcode / copykit
  Toolkit for single-cell copy number analysis
  ☆25Updated this week
• tanaylab / embflow
  ☆12Updated 3 years ago
• wulabupenn / scNT-seq
  Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)
  ☆16Updated 2 years ago
• SchulzLab / STARE
  TF analysis from epigenetic and Hi-C data
  ☆18Updated 8 months ago
• FertigLab / pycogaps
  python API to the CoGAPS NMF package
  ☆19Updated 7 months ago
• navinlabcode / ACT_paper
  Scripts used for the ACT paper
  ☆12Updated 4 years ago
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆25Updated 3 years ago
• Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel
  ☆15Updated 3 years ago
• pablo-gar / somatic_mutations_GTEx
  Methods and analysis for Garcia-Nieto, et al. Somatic mutations
  ☆16Updated 5 years ago
• Henikoff / scCUT-Tag
  ☆17Updated 2 years ago
• GuanLab / FastClone_GuanLab
  ☆15Updated 4 years ago