wanglabtongji / STRIDELinks
STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using single-cell transcriptomics data.
☆26Updated last year
Alternatives and similar repositories for STRIDE
Users that are interested in STRIDE are comparing it to the libraries listed below
Sorting:
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆29Updated 4 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- ☆60Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆23Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 11 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- ☆60Updated 2 months ago
- ☆24Updated 2 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 8 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 3 months ago
- ☆50Updated 5 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- Single-Cell Inference of Class Switch Recombination☆19Updated 2 months ago
- ☆30Updated 6 months ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆37Updated 2 years ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆34Updated this week
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 2 months ago
- ☆53Updated 2 years ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆31Updated 3 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated 2 weeks ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆63Updated last year
- ☆10Updated 2 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago
- ☆16Updated last year