STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using single-cell transcriptomics data.
☆27Jan 23, 2024Updated 2 years ago
Alternatives and similar repositories for STRIDE
Users that are interested in STRIDE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- tutorials for spateo package☆20Dec 25, 2024Updated last year
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆20May 13, 2026Updated 3 weeks ago
- ☆29Jan 4, 2024Updated 2 years ago
- Weighted gene co-expression network analysis for scRNA-seq data in Seurat☆10Dec 15, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆30Oct 4, 2021Updated 4 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- ☆46May 4, 2024Updated 2 years ago
- Breast Cancer Single Cell Atlas☆12Mar 31, 2022Updated 4 years ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 2 months ago
- Code for spatial subclone paper☆18Jan 23, 2025Updated last year
- Spatial Single Cell transcriptomic library☆21Jan 15, 2026Updated 4 months ago
- ☆12Mar 22, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆27Jun 4, 2023Updated 3 years ago
- ☆131Mar 27, 2022Updated 4 years ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆249May 5, 2026Updated last month
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆145Feb 20, 2025Updated last year
- Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution☆14May 4, 2022Updated 4 years ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- ☆12Oct 23, 2023Updated 2 years ago
- ☆15Feb 28, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆18Mar 18, 2024Updated 2 years ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆31Oct 24, 2024Updated last year
- ☆26Dec 25, 2023Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Aug 12, 2022Updated 3 years ago
- ☆20Jun 8, 2023Updated 3 years ago
- ☆16May 23, 2022Updated 4 years ago
- A toolkit of spatial transcriptomic analysis.☆286May 20, 2026Updated 3 weeks ago
- Information-based dimensionality reduction☆29Dec 14, 2024Updated last year
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Jul 3, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Regulatory networks with Direct Information in python☆41Mar 9, 2023Updated 3 years ago
- ☆152Mar 20, 2026Updated 2 months ago
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated 2 years ago
- ☆15Oct 24, 2025Updated 7 months ago
- Predict RNA velocity through deep learning☆72Dec 12, 2023Updated 2 years ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆179Jan 8, 2026Updated 5 months ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆37Feb 10, 2025Updated last year