STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using single-cell transcriptomics data.
☆27Jan 23, 2024Updated 2 years ago
Alternatives and similar repositories for STRIDE
Users that are interested in STRIDE are comparing it to the libraries listed below
Sorting:
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- tutorials for spateo package☆20Dec 25, 2024Updated last year
- ☆28Jan 4, 2024Updated 2 years ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆28Oct 4, 2021Updated 4 years ago
- Combined clonality and transcriptome scRNAseq clustering method☆11Dec 3, 2022Updated 3 years ago
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆17Feb 20, 2026Updated last week
- Spatial Single Cell transcriptomic library☆19Jan 15, 2026Updated last month
- Breast Cancer Single Cell Atlas☆12Mar 31, 2022Updated 3 years ago
- ☆27Jun 4, 2023Updated 2 years ago
- Code for spatial subclone paper☆16Jan 23, 2025Updated last year
- ☆15Feb 28, 2022Updated 4 years ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- ☆12Mar 22, 2023Updated 2 years ago
- ☆16May 23, 2022Updated 3 years ago
- ☆47May 4, 2024Updated last year
- ☆12Oct 23, 2023Updated 2 years ago
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆18Mar 18, 2024Updated last year
- Reworked clustering metrics for assessing performance in imbalanced settings☆18Jun 3, 2024Updated last year
- ☆128Mar 27, 2022Updated 3 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Aug 12, 2022Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Sep 20, 2022Updated 3 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆138Feb 20, 2025Updated last year
- ☆10May 31, 2022Updated 3 years ago
- ☆19Jun 8, 2023Updated 2 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- A novel machine learning pipeline to analyse spatial transcriptomics data☆240Updated this week
- single cell analysis of treatment naive and treated human PDAC☆25May 27, 2022Updated 3 years ago
- ☆21Dec 23, 2024Updated last year
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Jul 3, 2022Updated 3 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- Tools to handle IMC data☆24Mar 31, 2022Updated 3 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆11Aug 2, 2023Updated 2 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 10 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆29Oct 24, 2024Updated last year
- A toolkit of spatial transcriptomic analysis.☆274Feb 12, 2026Updated 2 weeks ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Sep 18, 2025Updated 5 months ago
- Tumor Immune Single-cell Hub☆22Aug 13, 2020Updated 5 years ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago