wanglabtongji / STRIDE
STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using single-cell transcriptomics data.
☆27Updated last year
Alternatives and similar repositories for STRIDE:
Users that are interested in STRIDE are comparing it to the libraries listed below
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated 2 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 3 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 5 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 6 months ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆30Updated 2 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆40Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- Functions for single cell data analysis☆31Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆64Updated 6 months ago
- ☆17Updated 2 years ago
- Single-Cell Inference of Class Switch Recombination☆19Updated last month
- Spatial transcriptomics of heart tissue☆21Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 10 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆34Updated this week
- ☆22Updated last year
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆35Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆16Updated 3 years ago
- ☆12Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Calculation of Reference/Cluster Similarity Spectrum (RSS/CSS)☆31Updated last year
- ☆53Updated 9 months ago
- ☆43Updated last year
- ☆40Updated 4 years ago
- ☆22Updated 2 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 3 years ago
- Publically accessible code for DIISCO method☆10Updated 6 months ago