Nanostring-Biostats / SpatialDeconLinks
The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This algorithm also works in bulk expression profiling data.)
☆41Updated 3 weeks ago
Alternatives and similar repositories for SpatialDecon
Users that are interested in SpatialDecon are comparing it to the libraries listed below
Sorting:
- ☆53Updated 2 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated last week
- Mollecular Functional Portraits☆43Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 8 months ago
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆84Updated 4 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆34Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆94Updated 7 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆88Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- An R package for handling and analysing imaging mass cytometry data☆29Updated last week
- Spatial transcriptomics analyses and decoding in R☆23Updated 2 months ago
- Identify genes with spatial expression trends in single-cell gene expression data☆50Updated 7 years ago
- Spatial Cellular Estimator for Tumors☆60Updated 2 weeks ago
- ☆41Updated 4 years ago
- Draw phylogenetic trees of tumor evolution☆87Updated 2 years ago
- ☆32Updated 7 months ago
- SCDC☆45Updated 6 months ago
- R package for Pathway RespOnsive GENe activity inference☆113Updated 2 years ago
- R package for semi-supervised single-cell data integration☆94Updated 3 weeks ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆68Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆135Updated 5 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆45Updated 2 years ago
- Pan-Cancer Single Cell Classifier☆83Updated last year
- ☆63Updated 5 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Updated 4 years ago
- Methods for decontamination of single cell data☆54Updated 10 months ago