The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This algorithm also works in bulk expression profiling data.)
☆45Feb 5, 2026Updated 8 months ago
Alternatives and similar repositories for SpatialDecon
Users that are interested in SpatialDecon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆33May 19, 2025Updated last year
- Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of …☆12Dec 8, 2021Updated 4 years ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆24Sep 29, 2025Updated last year
- ☆23Sep 8, 2023Updated 3 years ago
- ☆20Apr 8, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Spatial transcriptomics analyses and decoding in R☆27Jul 8, 2026Updated 3 months ago
- ☆137Feb 11, 2024Updated 2 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆30May 15, 2024Updated 2 years ago
- Scripts to reproduce analyses of tradeSeq paper.☆17Feb 5, 2020Updated 6 years ago
- ☆26Jul 9, 2025Updated last year
- Difference in Intercellular Communication from scRNA-seq data☆27Oct 14, 2025Updated last year
- ☆74May 28, 2025Updated last year
- ☆14Jun 11, 2023Updated 3 years ago
- Identify genes with spatial expression trends in single-cell gene expression data☆52Mar 20, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.☆16Jun 25, 2026Updated 3 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆489Jan 22, 2026Updated 8 months ago
- MASC: Mixed-effects Association testing for Single Cells☆16Apr 16, 2021Updated 5 years ago
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆49Sep 29, 2025Updated last year
- ☆20Sep 29, 2021Updated 5 years ago
- nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data☆24Jul 14, 2026Updated 3 months ago
- Weighted gene co-expression network analysis for scRNA-seq data in Seurat☆10Dec 15, 2023Updated 2 years ago
- ☆30Mar 12, 2026Updated 7 months ago
- Fast motif matching in R☆49Jan 24, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Gene set variation analysis☆248Updated this week
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- Piranha is a peak-caller for CLIP- and RIP-seq data☆21Feb 7, 2018Updated 8 years ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆190Jan 8, 2026Updated 9 months ago
- ☆33May 4, 2025Updated last year
- Bayesian Analytics for Spatial Segmentation☆33May 4, 2025Updated last year
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆41May 7, 2024Updated 2 years ago
- Spatial Transcriptomics Capture Location Deconvolution☆215Oct 20, 2025Updated 11 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆16Sep 26, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆22Jan 15, 2023Updated 3 years ago
- Spatially aware dimension reduction for spatial transcriptomics.☆69Mar 18, 2025Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆19Apr 20, 2024Updated 2 years ago
- Gene perturbation prediction using LLM embeddings☆17Sep 16, 2026Updated last month
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆92Mar 19, 2026Updated 6 months ago
- An R package to analyze single-cell V(D)J data☆30Nov 13, 2023Updated 2 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆186Jun 10, 2024Updated 2 years ago