deepomicslab / SpecHapLinks
☆12Updated last year
Alternatives and similar repositories for SpecHap
Users that are interested in SpecHap are comparing it to the libraries listed below
Sorting:
- De novo tandem repeat calling from PacBio HiFi data☆18Updated 2 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 10 months ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Differential quantification of alternative splicing events on spliced pangenome graphs☆14Updated 6 months ago
- Tandem repeat genotyping with long reads☆29Updated 2 months ago
- Detect and phase minor SNVs from long-read sequencing data☆13Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated last month
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 2 months ago
- Lift-over alignments from variant-aware references☆35Updated 2 years ago
- General purpose utility related to GAF files☆29Updated this week
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 8 months ago
- Reference bias measuring toolkit☆18Updated 3 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- The MafFilter genome alignment processor☆19Updated 2 months ago
- ☆21Updated 5 months ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆17Updated this week
- Minimizer-based assembly scaffolding and mapping using long reads☆43Updated 10 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 3 weeks ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 6 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- ☆14Updated last year
- ☆17Updated last year