Alternatives and similar repositories for SpatialDecon-manuscript-analyses:

Users that are interested in SpatialDecon-manuscript-analyses are comparing it to the libraries listed below

• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆20Updated 2 years ago
• ventolab / UHCA-Uterine-Human-Cell-Altas
  UHCA
  ☆11Updated 2 months ago
• yanailab / PanCancer
  Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…
  ☆30Updated 2 years ago
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• strangephone / EENT-ONB
  scRNA-seq analysis of EENT-ONB
  ☆18Updated last year
• Teichlab / HCA_Heart_ver2
  ☆30Updated last year
• Chuxj / CRC-atlas
  ☆25Updated 10 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆34Updated last month
• pancancer / myeloid
  Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…
  ☆11Updated last year
• kaishumason / NicheDE
  NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.
  ☆17Updated 5 months ago
• immunogenomics / sceQTL
  Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)
  ☆19Updated last year
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆51Updated last week
• kaifuchenlab / MEBOCOST
  ☆16Updated 9 months ago
• miccec / GBMstates
  Scripts from the GBM cellular states paper
  ☆18Updated 4 years ago
• LiHongCSBLab / SOAPy
  ☆25Updated last month
• lhuang1 / Th17_single_cell
  ☆12Updated 3 years ago
• shenglinmei / ProstateCancerAnalysis
  ☆17Updated last month
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆26Updated 2 years ago
• Junjie-Hu / NSCLC-immunotherapy
  ☆20Updated last year
• pekjoonwu / CELINA
  ☆14Updated 4 months ago
• marcalva / hcc_sc_2022
  HCC single cell analysis for Alvarez, Benhammou et al.
  ☆16Updated 2 years ago
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆49Updated last year
• bsungwoo / spSeudoMap
  spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data
  ☆12Updated 6 months ago
• compbioNJU / scPDAC
  R code used to analyze single cell PDAC data
  ☆34Updated 9 months ago
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆25Updated 8 months ago
• ChanLab-UTSW / BreastCancer_Integrated
  ☆28Updated last month
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆18Updated last year
• tiroshlab / Spatial_Glioma
  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
  ☆42Updated 2 months ago
• Banovich-Lab / Spatial_PF
  ☆23Updated last month
• smorabit / hdWGCNA_paper
  Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)
  ☆16Updated last year