Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of cell types in spatially-resolved gene expression data"
☆12Dec 8, 2021Updated 4 years ago
Alternatives and similar repositories for SpatialDecon-manuscript-analyses
Users that are interested in SpatialDecon-manuscript-analyses are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Jul 1, 2025Updated 8 months ago
- ☆12Dec 16, 2021Updated 4 years ago
- ☆33May 19, 2025Updated 10 months ago
- ☆19Sep 29, 2021Updated 4 years ago
- ☆11May 6, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆17Sep 17, 2019Updated 6 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆29Aug 11, 2022Updated 3 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Jul 6, 2020Updated 5 years ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆41Feb 5, 2026Updated last month
- SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.☆11Jan 26, 2018Updated 8 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Dec 15, 2021Updated 4 years ago
- ☆31May 4, 2025Updated 10 months ago
- Central repository for the Multiplexed Tissue Imaging Workshop 2023.☆10Jan 9, 2023Updated 3 years ago
- An R package for ECM molecule annotation, classification, and analysis☆14Sep 20, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆11Oct 4, 2022Updated 3 years ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- Example CellProfiler pipelines.☆17Jul 19, 2022Updated 3 years ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆11Mar 3, 2023Updated 3 years ago
- QTL mapping for Diversity Outbred mice (and other multi-founder advanced intercrosses)☆14Apr 3, 2024Updated last year
- Feature selection for preserving biological trajectories in single-cell data☆21May 29, 2025Updated 9 months ago
- ☆23Jul 9, 2025Updated 8 months ago
- Scripts to reproduce analyses of tradeSeq paper.☆16Feb 5, 2020Updated 6 years ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆13Oct 30, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Course website for Genomic Data Visualization 2022☆16Dec 28, 2022Updated 3 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆48Aug 7, 2021Updated 4 years ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆17Sep 26, 2021Updated 4 years ago
- Source code and binaries for the SOAP2 alignment tool developed by BGI.☆10Dec 22, 2023Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Jun 14, 2019Updated 6 years ago
- ☆20Feb 17, 2021Updated 5 years ago
- Reproducibility Repo for mvTCR paper☆13Apr 2, 2024Updated last year
- Enhancer Linking by Methylation/Expression Relationship (ELMER) is package to identify tumor-specific changes in DNA methylation within d…☆25Feb 4, 2026Updated last month
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Apr 4, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆16Feb 10, 2023Updated 3 years ago
- A human universal senescence index to evaluate celluar senescence☆41Sep 11, 2025Updated 6 months ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Mar 26, 2022Updated 4 years ago
- Helper functions for working with inForm data.☆20May 3, 2022Updated 3 years ago
- Subpopulation detection in high-dimensional single-cell data☆142Oct 22, 2020Updated 5 years ago
- ☆17Dec 18, 2023Updated 2 years ago
- ☆20Jul 28, 2025Updated 8 months ago