Nanostring-Biostats / SpatialDecon-manuscript-analyses
Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of cell types in spatially-resolved gene expression data"
☆12Updated 3 years ago
Alternatives and similar repositories for SpatialDecon-manuscript-analyses:
Users that are interested in SpatialDecon-manuscript-analyses are comparing it to the libraries listed below
- Spatial transcriptomics of heart tissue☆20Updated 2 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆33Updated last week
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆28Updated 2 years ago
- Spatial Cellular Estimator for Tumors☆47Updated this week
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- ☆17Updated 11 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆23Updated 7 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆30Updated 2 weeks ago
- ☆27Updated 3 months ago
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆11Updated 4 months ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆45Updated 6 months ago
- R code used to analyze single cell PDAC data☆32Updated 7 months ago
- ☆24Updated 8 months ago
- ☆10Updated 8 months ago
- ☆27Updated last year
- ☆12Updated 2 years ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆16Updated 2 years ago
- Integration of gut cell atlases☆19Updated last week
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆40Updated last month
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆14Updated 4 months ago
- UHCA☆11Updated 3 weeks ago
- ☆16Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆24Updated this week
- ☆14Updated 8 months ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated last month
- Cell-type Relationship Analysis Workflow Done Across Distances☆30Updated 3 weeks ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 2 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆32Updated 4 years ago