MagpiePKU / EpiTrace
Cell age determination by scATAC-seq and bulk-ATAC-seq
☆29Updated 5 months ago
Alternatives and similar repositories for EpiTrace:
Users that are interested in EpiTrace are comparing it to the libraries listed below
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆36Updated last month
- ☆31Updated 9 months ago
- Single-Cell Inference of Class Switch Recombination☆18Updated 6 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 2 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆24Updated last month
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- ☆29Updated 3 weeks ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 4 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆59Updated 4 months ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- ☆39Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 2 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆21Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆18Updated 7 months ago
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- Functions for single cell data analysis☆29Updated 3 years ago
- ☆45Updated 6 months ago
- scWGCNA☆56Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 7 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 11 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 months ago
- Functional Inference of Gene Regulation☆40Updated 7 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 2 months ago
- iterative clustering pipeline of big single cell datasets.☆29Updated 2 weeks ago
- Ordering gene-expression and functional events in single-cell experiments☆21Updated 11 months ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆19Updated last year
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆12Updated last year
- ☆10Updated last year