MagpiePKU / EpiTrace
Cell age determination by scATAC-seq and bulk-ATAC-seq
☆29Updated 8 months ago
Alternatives and similar repositories for EpiTrace
Users that are interested in EpiTrace are comparing it to the libraries listed below
Sorting:
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 5 months ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 4 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 6 months ago
- ☆49Updated 9 months ago
- ☆33Updated last year
- cell type deconvolution for multi-condition bulk RNA-seq data☆25Updated 3 years ago
- cell type specific, trait-associated gene regulation☆25Updated last month
- ☆31Updated 3 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆42Updated last year
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆25Updated 2 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 6 months ago
- ☆10Updated 2 years ago
- R package to detect breakpoints and assign somies to scATAC-seq data☆37Updated last month
- Single-Cell Inference of Class Switch Recombination☆19Updated last month
- Functions for single cell data analysis☆31Updated 3 years ago
- ☆22Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆36Updated 4 years ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- scWGCNA☆60Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 5 months ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆19Updated 10 months ago
- Functional Inference of Gene Regulation☆43Updated 10 months ago
- R package of CSOmap(developing☆14Updated 3 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆47Updated 6 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 10 months ago
- ☆55Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago