Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
☆38Aug 6, 2026Updated last week
Alternatives and similar repositories for XClone
Users that are interested in XClone are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Apr 16, 2021Updated 5 years ago
- Pan-Cancer Single Cell Classifier☆87May 30, 2024Updated 2 years ago
- Single-cell copy number calling and event history reconstruction.☆28May 13, 2026Updated 2 months ago
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆226Feb 4, 2026Updated 6 months ago
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆25Nov 25, 2025Updated 8 months ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆15Nov 9, 2023Updated 2 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆50Aug 18, 2025Updated 11 months ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 5 months ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 6 months ago
- Analysis pipeline used to benchmark scRNA-seq copy number variant callers☆17May 17, 2026Updated 2 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆127Mar 19, 2026Updated 4 months ago
- ☆300Jun 16, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated last year
- R package for processing of GWAS output☆17Jul 9, 2024Updated 2 years ago
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆18Nov 25, 2024Updated last year
- Inferring CNV from Single-Cell RNA-Seq☆680Nov 14, 2025Updated 8 months ago
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Apr 2, 2024Updated 2 years ago
- ☆10Nov 30, 2024Updated last year
- Identification of clone-specific and cancer-selective multi-targeting therapeutic options based on single-cell transcriptomic profiles of…☆25Feb 20, 2025Updated last year
- A tool for detecting somatic variants in single cell data☆228Sep 15, 2024Updated last year
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆87Jul 20, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆137Sep 6, 2024Updated last year
- ☆10Sep 27, 2022Updated 3 years ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆22Oct 8, 2025Updated 10 months ago
- ☆20Apr 8, 2025Updated last year
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆60Jan 15, 2024Updated 2 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- ☆39Updated this week
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆44Nov 13, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Functional code templates for the Star Protocols paper describing consolidated WES variant calling with 3 callers☆10Oct 18, 2024Updated last year
- Methods to discover gene programs on single-cell data☆205Jul 21, 2026Updated 3 weeks ago
- ☆10Oct 15, 2025Updated 9 months ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆32Jun 19, 2024Updated 2 years ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- Map single-cell transcriptomes to copy number evolutionary trees.☆14Aug 18, 2024Updated last year
- ☆31Jul 27, 2026Updated 2 weeks ago