Spatially constrained color profiling for visualizing single-cell resolution spatial data
☆26Sep 23, 2024Updated last year
Alternatives and similar repositories for Spaco
Users that are interested in Spaco are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MRtree R implementation☆14Mar 1, 2023Updated 3 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated last year
- SPatial INtegration of spatially resolved transcriptomics datasets☆18Mar 14, 2025Updated last year
- ☆41Oct 24, 2025Updated 7 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Spatiotemporal modeling of spatial transcriptomics☆342Feb 25, 2026Updated 3 months ago
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆43Mar 2, 2025Updated last year
- ☆18Jun 13, 2019Updated 6 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 4 months ago
- Automatically annotate cell types, consistently across samples.☆23Updated this week
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆102Feb 26, 2025Updated last year
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Sep 8, 2023Updated 2 years ago
- ☆22Sep 26, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Develop custom oligo design pipelines.☆29May 19, 2026Updated 3 weeks ago
- Spatially resolved transcriptomic analysis☆66Nov 17, 2022Updated 3 years ago
- Spatial-Linked Alignment Tool☆92Dec 20, 2024Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- Tools for assessing clustering robustness☆32Apr 2, 2026Updated 2 months ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Jun 8, 2021Updated 5 years ago
- StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…☆39Dec 23, 2025Updated 5 months ago
- ☆10Mar 15, 2024Updated 2 years ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆26Jan 31, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- Static plotting for spatialdata☆82Updated this week
- A collection of tools to process single-cell omics datasets.☆52Updated this week
- Inferring CNV data from single cell ATAC seq☆29Jun 24, 2025Updated 11 months ago
- ☆11Dec 17, 2019Updated 6 years ago
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated last year
- A highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learn…☆11May 19, 2021Updated 5 years ago
- Human Muscle Ageing Cell Atlas☆21Mar 8, 2024Updated 2 years ago
- MusMorph, a database of standardized mouse morphology data for morphometric meta-analyses.☆11Jul 25, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tools for analyzing Slide-seq data☆32Oct 30, 2023Updated 2 years ago
- ☆30Jul 25, 2024Updated last year
- Identify one or more connected, focally amplified genomic regions to elucidate the architecture of focal amplifications such as ecDNA.☆12May 14, 2026Updated 3 weeks ago
- ☆14Apr 19, 2020Updated 6 years ago
- ☆33May 4, 2025Updated last year
- Good Software Engineering Practice for R Packages☆15Sep 25, 2023Updated 2 years ago
- Gene expression deconvolution using dampened weighted least squares☆36Feb 4, 2021Updated 5 years ago