BrainStOrmics / Spaco
Spatially constrained color profiling for visualizing single-cell resolution spatial data
☆23Updated 3 months ago
Alternatives and similar repositories for Spaco:
Users that are interested in Spaco are comparing it to the libraries listed below
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆21Updated 5 months ago
- CAST package☆27Updated 2 months ago
- cell type specific, trait-associated gene regulation☆18Updated last month
- ☆47Updated last year
- Multi-resolution Variational Inference☆22Updated 3 months ago
- ☆33Updated 3 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆33Updated last month
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆50Updated last week
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆28Updated 4 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆36Updated 4 months ago
- R implementation of GeneTrajectory☆51Updated 9 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- SPatial INtegration of spatially resolved transcriptomics datasets☆13Updated 4 months ago
- Python implementation of Gene Trajectory☆24Updated 4 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆52Updated 3 months ago
- .h5mu files interface for Seurat☆28Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 7 months ago
- Neural Crest Fate Decisions☆10Updated 5 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆43Updated 2 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated last month
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆47Updated 2 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆49Updated 3 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆22Updated 11 months ago
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆34Updated last year
- iterative clustering pipeline of big single cell datasets.☆27Updated last week
- ☆12Updated 2 years ago
- ☆29Updated 5 months ago
- ☆26Updated last year
- MRtree R implementation☆11Updated last year
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago