kunwang34 / PhyloVeloLinks
PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
☆43Updated last year
Alternatives and similar repositories for PhyloVelo
Users that are interested in PhyloVelo are comparing it to the libraries listed below
Sorting:
- ☆45Updated last year
- ☆56Updated 2 months ago
- R implementation of GeneTrajectory☆63Updated last year
- ☆37Updated 2 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Python implementation of Gene Trajectory☆25Updated 11 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last month
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated this week
- Functional Inference of Gene Regulation☆46Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated 2 weeks ago
- ☆20Updated 2 weeks ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 7 months ago
- Predict RNA velocity through deep learning☆70Updated last year
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆27Updated 4 years ago
- inferring regulatory cellular dynamics☆50Updated last week
- SPROD: Spatial expression profiling de-noising☆37Updated 2 years ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Updated 3 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 11 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 8 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated 3 weeks ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 6 months ago
- Accurate and fast cell marker gene identification with COSG☆46Updated 5 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- ☆35Updated 11 months ago
- Spatial Cellular Estimator for Tumors☆57Updated last week
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆25Updated 2 months ago
- ☆31Updated 2 years ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated 2 years ago