PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
☆43Sep 18, 2025Updated 6 months ago
Alternatives and similar repositories for PhyloVelo
Users that are interested in PhyloVelo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated last month
- Code & utilities for the manuscript "Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution"☆14May 27, 2023Updated 2 years ago
- Spatial Single Cell transcriptomic library☆19Jan 15, 2026Updated 2 months ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- Multi-omic velocity inference☆118Oct 23, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆26Dec 25, 2023Updated 2 years ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆99Feb 5, 2026Updated last month
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated 8 months ago
- Predict RNA velocity through deep learning☆72Dec 12, 2023Updated 2 years ago
- ☆41Jun 24, 2025Updated 9 months ago
- 𝒫robabilistic modeling of RNA velocity ⬱☆49Updated this week
- ☆66Jul 13, 2023Updated 2 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆23Jan 12, 2024Updated 2 years ago
- ☆32Jul 29, 2025Updated 7 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆19May 5, 2024Updated last year
- ☆13Feb 12, 2026Updated last month
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20May 22, 2021Updated 4 years ago
- ☆20Aug 20, 2024Updated last year
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- ☆10Sep 27, 2022Updated 3 years ago
- ☆20May 30, 2022Updated 3 years ago
- single cell analysis of treatment naive and treated human PDAC☆25May 27, 2022Updated 3 years ago
- The scripts used for the analyses in TOME project☆24Nov 28, 2025Updated 3 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Highly scalable integration and classification of single-cell RNA sequencing data☆11Dec 27, 2020Updated 5 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated last year
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Mar 4, 2020Updated 6 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- ☆26Aug 15, 2023Updated 2 years ago
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Mar 3, 2020Updated 6 years ago
- Non-parametric density inference for single-cell analysis.☆73Mar 20, 2026Updated last week
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- trajectory inference☆107Jan 27, 2025Updated last year
- Modeling Latent Flow Structure using Hodge Decomposition☆16Mar 13, 2025Updated last year
- Identifying tumor cells at the single-cell level using machine learning☆50Nov 10, 2024Updated last year
- Implementation of entropy of mixing algorithm in python☆10Oct 19, 2022Updated 3 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 7 months ago
- SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/☆23Sep 19, 2021Updated 4 years ago