welch-lab / MultiVeloLinks
Multi-omic velocity inference
☆113Updated last year
Alternatives and similar repositories for MultiVelo
Users that are interested in MultiVelo are comparing it to the libraries listed below
Sorting:
- Context specific and dynamic gene regulatory network reconstruction and analysis☆126Updated last month
- Metacells - Single-cell RNA Sequencing Analysis☆116Updated last year
- ☆85Updated this week
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆78Updated last week
- ☆131Updated 2 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆77Updated 10 months ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆116Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆174Updated 8 months ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 3 months ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 5 months ago
- Predict RNA velocity through deep learning☆71Updated 2 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆124Updated 7 months ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- trajectory inference☆105Updated 10 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆82Updated 9 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆31Updated 3 weeks ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆72Updated 4 years ago
- A tool for semi-automatic cell type harmonization and integration☆117Updated last month
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 11 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆137Updated 10 months ago
- Cell cycle inference in single-cell RNA-seq☆51Updated 2 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆71Updated 3 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆47Updated 4 years ago
- inferring regulatory cellular dynamics☆61Updated 3 months ago
- Single cell omics biology annotations☆51Updated 8 months ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆184Updated last year
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆88Updated 2 weeks ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆51Updated 11 months ago