Multi-omic velocity inference
☆120Oct 23, 2024Updated last year
Alternatives and similar repositories for MultiVelo
Users that are interested in MultiVelo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆70Jul 9, 2026Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Feb 19, 2026Updated 5 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆33Jan 30, 2026Updated 6 months ago
- Predict RNA velocity through deep learning☆72Dec 12, 2023Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆69Jul 8, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆16Sep 1, 2023Updated 2 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆262Jan 16, 2026Updated 6 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆194Mar 27, 2025Updated last year
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆129Aug 3, 2026Updated last week
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆45Jun 12, 2026Updated last month
- Deep Generative Modeling of RNA Velocity☆39Oct 21, 2025Updated 9 months ago
- Mosaic single cell data integration using non-overlapping features☆39Sep 20, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆506Jul 26, 2026Updated 2 weeks ago
- ☆13Apr 16, 2021Updated 5 years ago
- This is the alpha version of the CellOracle package☆480Apr 30, 2026Updated 3 months ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆462Feb 18, 2025Updated last year
- CellRank: dynamics from multi-view single-cell data☆454Aug 3, 2026Updated last week
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆102Sep 9, 2025Updated 11 months ago
- trajectory inference☆109Jan 27, 2025Updated last year
- Multiome GRN inference.☆141Apr 10, 2026Updated 4 months ago
- Graph-linked unified embedding for single-cell multi-omics data integration☆474Feb 9, 2026Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆69Apr 22, 2026Updated 3 months ago
- Regulatory networks with Direct Information in python☆42Mar 9, 2023Updated 3 years ago
- Multi-resolution Variational Inference☆23Jul 13, 2026Updated 3 weeks ago
- Python implementation of Milo for differential abundance testing on KNN graph☆85Feb 17, 2025Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆442May 11, 2026Updated 2 months ago
- RNA Velocity generalized through dynamical modeling☆506Feb 25, 2026Updated 5 months ago
- Code for scKINETICS (ISMB 2023)☆22Oct 23, 2023Updated 2 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆124Jan 22, 2024Updated 2 years ago
- R package for integrating and analyzing multiple single-cell datasets☆432Feb 4, 2026Updated 6 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆202Jan 30, 2026Updated 6 months ago
- Single-cell epigenomics analysis tools☆324Aug 4, 2026Updated last week
- Tutorials on using latest dynamo package☆27Jul 1, 2026Updated last month
- Non-parametric density inference for single-cell analysis.☆75Jul 28, 2026Updated 2 weeks ago
- ☆21Dec 23, 2024Updated last year
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 4 years ago
- Learning cell communication from spatial graphs of cells☆120Jan 15, 2024Updated 2 years ago