Alternatives and similar repositories for MultiVelo:

Users that are interested in MultiVelo are comparing it to the libraries listed below

• tanaylab / metacells
  Metacells - Single-cell RNA Sequencing Analysis
  ☆101Updated 3 months ago
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆153Updated 6 months ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆61Updated last year
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆108Updated 11 months ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆95Updated this week
• YosefLab / popV
  ☆65Updated this week
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆60Updated 8 months ago
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆67Updated last year
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆59Updated 7 months ago
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆119Updated 8 months ago
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆112Updated 4 months ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆66Updated last year
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆59Updated this week
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆100Updated 4 months ago
• dpeerlab / spectra
  Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms
  ☆161Updated 5 months ago
• ShobiStassen / VIA
  trajectory inference
  ☆94Updated 3 months ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆155Updated last year
• YosefLab / Compass
  In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
  ☆102Updated last week
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆134Updated last year
• rajewsky-lab / novosparc
  ☆126Updated last year
• martinjzhang / scDRS
  Single-cell disease relevance score (scDRS)
  ☆119Updated 3 months ago
• andreariba / DeepCycle
  Cell cycle inference in single-cell RNA-seq
  ☆41Updated last year
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆66Updated last year
• YosefLab / scib-metrics
  Accelerated, Python-only, single-cell integration benchmarking metrics
  ☆53Updated this week
• icbi-lab / infercnvpy
  Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
  ☆141Updated this week
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆99Updated 11 months ago
• prabhakarlab / Banksy
  BANKSY: spatial clustering
  ☆82Updated 5 months ago
• colomemaria / epiScanpy
  Episcanpy: Epigenomics Single Cell Analysis in Python
  ☆141Updated last month
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆77Updated 2 months ago