welch-lab / MultiVeloLinks
Multi-omic velocity inference
☆111Updated last year
Alternatives and similar repositories for MultiVelo
Users that are interested in MultiVelo are comparing it to the libraries listed below
Sorting:
- Metacells - Single-cell RNA Sequencing Analysis☆113Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated 2 weeks ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆168Updated 6 months ago
- ☆83Updated this week
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 8 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆76Updated last month
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆66Updated 3 weeks ago
- Predict RNA velocity through deep learning☆71Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆65Updated 3 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆80Updated 7 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆70Updated 4 years ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- ☆131Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆120Updated 5 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆50Updated 9 months ago
- R implementation of GeneTrajectory☆65Updated last year
- Python implementation of the Slingshot pseudotime algorithm☆66Updated last week
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- A tool for semi-automatic cell type harmonization and integration☆111Updated 7 months ago
- Single cell omics biology annotations☆51Updated 6 months ago
- Non-parametric density inference for single-cell analysis.☆72Updated 5 months ago
- ☆46Updated last year
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆27Updated last month
- TACCO: Transfer of Annotations to Cells and their COmbinations☆61Updated last month
- ☆59Updated 4 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆133Updated last year
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆117Updated this week
- Clonotype Neighbor Graph Analysis☆92Updated 2 months ago